Osmerus eperlanus (European smelt): 134020861
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Entry
134020861 CDS
T10927
Symbol
utp4
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
134020861 (utp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
oep03009
]
134020861 (utp4)
Ribosome biogenesis [BR:
oep03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
134020861 (utp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
Beta-prop_EML_2
WD40
WD40_WDHD1_1st
WD40_Prp19
WDR55
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_NUP159_NUP214
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_HPS5
Beta-prop_SCAP
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
PROPPIN
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
DUF7165
Beta-prop_EIPR1
Ge1_WD40
Motif
Other DBs
NCBI-GeneID:
134020861
NCBI-ProteinID:
XP_062317146
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Position
5:complement(3906015..3911024)
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AA seq
685 aa
AA seq
DB search
MGEFKVHRVRFFDYMPSAIRALAFNPRTEKLALVRADASVEIFNFRDNYFQENVIPGRDS
RSTEALCWVGERLFSAGLNGEITEYDLEALRPKYSLDAYGGPVWTLTCNPQGTHLAVGCE
DGTVKLFEVLEDRVQFERHLERQKGRIISLAWHPSGTQIAAGMMDMIRVFDVASGHGVQR
LLVDRGVGPSKGRECVVWSVAFLSDHTLVSGDSAGKLQVWDGHTGTLLKTHLITKWDVLA
LSVSQDESSLVAGTSEGTVVQFQFLAPSLQQQAKEWVRTRTFKNHTHDVRSLVEIGTAVI
SGGMDTQLVVRPLLDKVEKNTQESALRKIHFPHRSLVSCARKAGLLLFQFPGHLELWRLG
EGEGHGKPGESLAVKQRPEKLLHLKRKGEDHVCCSTLSPCGGWLAYATVSSVRLYRLQYD
NNSIGVTKVTKLPKVLRSASQLCFSSDSSRLFAACGKAAVVVVSLGQAECKYVHTLKPVS
DSGQAVRLLCASEDGDWLASSSSNCEVHIYNLHKLKLHCTLPVYSSCPSAIGIHPVTNNL
FVVHADQKMFEYSIHQKEYTVWSRRLQKQGLHHIWFDRDTPVTHVTFNPRNPAHVILQDA
YMFCIIDQSLPLPDQKARFLNQLTLRSLPEEERLKQSHAFKICKTFQHLLGMSLLEDQSV
VVVERPLVDIATQLPPPVRQKKFAT
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagtttaaagtgcaccgggtccggtttttcgactatatgccctctgccatccga
gccctagccttcaatccccgcacggaaaagcttgccttggtacgagcggatgcaagcgtg
gagatcttcaacttcagagacaactatttccaggagaatgtgatcccgggaagggactcg
cgatccaccgaggccctgtgctgggtcggagagcgtctgttcagtgccggcttgaacgga
gagatcaccgagtatgatctggaggccctccggcccaagtacagcctggacgcctacgga
ggccctgtctggaccctcacctgcaacccccaggggacccacctggcggtggggtgcgag
gacgggacagtgaagctgtttgaggttttggaggacagagttcagtttgaacgccacctg
gagagacagaaaggtcgtattatttctctggcctggcacccctctggcacgcagatcgca
gctggaatgatggacatgataagagtgtttgatgtagcgtcaggtcacggtgtgcagcgg
ctcctggtggaccgcggcgtgggcccctccaagggccgggagtgcgtggtgtggagcgtg
gccttcctgtcggaccacaccctggtgagcggagactccgccggcaagctccaggtgtgg
gacggccacacgggcacgctgctcaaaacgcacctcatcactaagtgggacgtgctggct
ctctccgtatctcaggacgagagcagcctggttgccgggacgtcggagggcacggtggtc
cagttccagttcctggctccctccttacagcagcaggccaaggagtgggtcagaaccagg
accttcaagaaccacacccacgacgtgcgcagcctggtggagatcggcacggcggtgatc
tctggaggtatggacacacagctggtagtgcgccctctgctggacaaggtagagaagaac
acccaggagtctgctctgcgcaagatacatttcccccacaggagcctggtgtcgtgcgcc
cggaaggctgggctgctgctgttccagttcccaggacacctggagctctggaggctgggg
gagggcgagggccacggaaagccaggagagagcttagcagtgaagcagagaccagaaaag
ctgttgcacctgaaaagaaagggagaagaccatgtgtgctgcagtactctgtccccctgc
gggggctggctggcctacgccaccgtgtccagcgtgcgtctctacaggcttcagtacgac
aacaacagcatcggcgtcaccaaggttaccaagctgccgaaggttctccgctccgccagt
cagctctgcttctcctcggactcctccaggctgtttgcggcctgcggcaaggcggccgtg
gtggtggtgtctctgggccaggcggagtgcaagtacgtgcacaccctcaagcccgtctca
gactccggacaggccgtgcggctcctgtgtgccagtgaggacggtgactggctggcctca
tccagcagcaactgtgaggtccacatctacaacctccacaaactaaagctccactgcacg
ttgcccgtatacagctcctgtcccagcgccatcggcatccaccctgtcacaaacaacctg
ttcgtagtgcacgctgaccagaagatgtttgagtactccatccatcagaaggagtacaca
gtgtggagtcgacggctgcagaagcagggtctccatcacatctggttcgaccgcgacacg
cccgtcacacacgtgacctttaacccccgaaaccccgcccacgtcatcctgcaggacgcg
tacatgttctgcatcattgaccagagcctgcccctccctgaccagaaggcgaggttcctc
aaccagctgaccctcaggagcctcccagaggaggagaggctgaaacagagccacgccttc
aaaatatgcaagaccttccagcacctgctgggtatgagcctgctggaggaccagtctgtg
gtggtggtagagcgccctctggtggatatcgcaactcagcttccccctccagtcagacag
aagaagtttgccacatag
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