Osmerus eperlanus (European smelt): 134020972
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Entry
134020972 CDS
T10927
Symbol
nlrc5
Name
(RefSeq) NLR family, CARD domain containing 5 isoform X1
KO
K22615
NLR family CARD domain containing 5
Organism
oep Osmerus eperlanus (European smelt)
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
oep04054
]
134020972 (nlrc5)
Pattern recognition receptors [BR:
oep04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
134020972 (nlrc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_NLRC3
LRR_TMOD-LMOD
NACHT
LRR_CARMIL
LRR_MHP1-HER1-GIP3
LRR_NLRC4
LRR_6
HTH_NLRC5
NLRC4_HD2
LRR_4
Atypical_Card
PRAME_C
WHD_NOD2
WHD_NACHT_C
nSTAND_NTPase5
AAA_30
LRR_8
Motif
Other DBs
NCBI-GeneID:
134020972
NCBI-ProteinID:
XP_062317343
LinkDB
All DBs
Position
5:complement(5419903..5443114)
Genome browser
AA seq
1924 aa
AA seq
DB search
MEDVEENEDVLAVLDQEAVELVDLLRSQAPAVLDTLYGMIDHRTRWRLERLDLLGRLAEM
IKYFRASGPARCSQFLETLCMECENIPMRLESRLVSVAGTTSIPMETVDCTSHIVGEDNS
LSHSHTLEGHGKRQCIDHVGCYSAAIRKMLQQRWERAVQNVLTEVSLDETWVSLRHGNPG
KPRDRPDRTPTADRMDRTTDILEVEEGIMEDRVSVASFLERSVGKVVVLLGPAGSGKTLQ
MSCVGQRWAQGLLPSYSLLVLLEFRQLNLLTSPLSLADLLLQCFLQPEGGDPEASAVLDF
ISDNPERTCWILDGYDEFHSKIQLGEERGSQKRGSQERGSQEGALGGEMEEMGGGLNLWS
PLPVARLVAGLCSRRVLPGCTLLLTCRPRDLGDLEEAADCVGELLGFDRCRVKEYAAKYF
QVRGQGQGEEALKMLLTNSHLLGLSYLPSLCHICCVYLEHMLCPQASRMPPPQVHPSPQD
RPRPQPPQSHQTPKLASTLTQIYLTVLWALLCQRPGRTPPPAPLHWSGGPPALHVYRSEV
RELGHLAMQGLDKGKILFLSDELSPKLLDLGLRTGLLSQVEVTLQNVSRGKGFTFTHLTL
QEFLCALHIMTSDKVNETQLKRKFNLRSRWTTRADPKTVFTDSLHLYMCGLASPACTHTL
VRLAEKAGARGRTLSGSGFGAETCVKKHQAVVLKLLKSLAGNPSLTGPKVVELYRCVQET
QNVELVREVVGSRPCMELRNIRLNPVDLDAIAFVVASAGVDFDLDFGACSMDLECLDILP
SCKHLHHLTFRGRKYDDRFADKLSSILPKLPTLRKLEFTSANLTDVGAARLSKALEECPN
ITDINLSDNSLSDDGIREVAEVFSRLPNLASVMLGGKNSCSLGSVLAVLEKTSSSANLES
IYADGKKEIKVVFSLKSSISSHNDTPGLTIRLLNQKMTGQQVLRLCELLASFPTLSVLDL
SGGLWEENSLQALTGALQQLSITQSLLLNDSSLSVDELLAMTSLLSQCPNVVTIDIRLPV
HVSVEFSGSRQTHNPGDETEATGVVVGRKLRMQGCGLLPSHLECLTDSLVRCSDLALLDL
SRNSLGTKGLRVLLDLLPQLSTIQQIHLGENDVSMEGVSLLAGALCSQRNLSEVCVSDGG
KKIVLLKFLPSTGQQPSDPRSSGGLDQGKKLGVISSALKASDVTNLCRKLLHCPSPLEID
LSHTSLKDEAVGSLRTFLPRMTTLHTLNLSHAHMSINGALLLVSCLGDCQRVREVDLRCQ
GESFIRLGEKTDRCSCRLSQYSLSCANVKKLSGILQQCPNLSDLDLSSNLLMDEGVKTFV
EYLPKLRIASSVSLNDNRLSKQGALHLVSAILSCARVSLVELSLGSEERLLIRFQPDNHC
GQTLSLNACSFQAGQLSRLAKILCSCASLEKLELRDNGLGMQQVMGLVEQLSCDHRQRSV
SVKEHWVGAQTAVELVSSCLELNPNIHILRVNHSTLHITLEDKTEFYRSSRGSSGCLPVV
KISLVDSAESRLHLEAMSSVLQRCAFLQDLLLSGCSLGREGVKVLCSAMPFLARLTTLSL
DSKEMCEDVVILLAEGLLHTKTLHNLKLTGHVISDIGVEALVRALRGLPALTSVDLSLCS
GWTAAGGVELMSGLGQCVFLQHISLDFVSLDEQSLSRLAQGLPHLSSLRTLNLNNVMVRS
SSEDQAVVLLLASLKGLTYLEEIELDCLRMGDGGVEELTRHVTAWAQLRKLRLSQNLVSD
QAGDKLLQALSSCSHLQELQLSRNSLGVASAARIAQVLPSLTHITVLDLSENKFGAEGSA
SLSKALVSMKSLVKLHLTSIGTPDLASLAASLDHCVSVQDVSLAWNGCQDDVAVELANVL
PRCLKLQRLDLEANDISIAGAETLVRSLKSCPSLQLLRLWKNRISQSDACRLTQKDQRVN
FSST
NT seq
5775 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgtagaagaaaatgaagatgttctcgcagtgctggaccaggaggctgtggag
ttggtggaccttctccgctctcaggcacccgctgttctggacacgttatatggtatgata
gaccaccgaacgaggtggcgactggagagacttgacttgttggggcgcttggctgaaatg
attaagtacttcagagcctccggccccgcgcgctgcagccagtttttggagacgttgtgt
atggaatgtgagaacatccccatgcgtctggaatctcgcctcgtgtctgtggccgggaca
acgagtataccaatggagactgttgactgcacttctcacattgtgggggaagacaactca
ctgtctcactctcacacactagagggccatggaaaacgccagtgcatagaccatgtgggg
tgctacagcgcagcaatacggaagatgctgcagcagaggtgggagagggcggtgcagaac
gtgctgaccgaggtctctctggatgagacctgggtttccctgcgccatggcaaccccggc
aagcctcgggacagaccagaccgaaccccaaccgcagacagaatggacagaacaacagat
atactggaggttgaggaggggatcatggaggacagggtgtcagttgcttcatttctggaa
cgttctgttggtaaggtggtggtactgctgggcccagcaggctcggggaagaccctccag
atgtcgtgtgtgggccagcgctgggcccagggtctcctcccctcctactccctcctggtg
ctgctggagttcagacagctgaacctgctgaccagccctctgtcactggctgacctgctg
ctgcaatgcttcctccagccagaggggggcgaccctgaggccagtgctgtactagacttc
atctcggacaatccagagaggacctgctggattctggacggctacgatgagttccactcc
aagattcaactgggggaggagaggggcagccagaagaggggcagtcaggagaggggcagc
caggagggggcgttggggggagagatggaggagatgggtgggggtctgaacctctggagc
cctctacccgtggcgaggctagtggctgggctctgtagccgcagggtactcccaggatgc
actttgctgctaacctgtcgtccacgggaccttggggacctggaggaggctgcggactgc
gtgggcgagctgctggggttcgaccggtgccgtgtcaaggaatacgcagcaaagtacttc
caggtcagaggtcagggtcagggcgaggaggcactgaagatgctcctgactaacagccac
ctcctcggcctctcctacctcccctccctctgccatatctgctgtgtttacctggaacac
atgctctgccctcaggcctctcgtatgccccctccccaggttcacccctctccccaggac
cgcccccggcctcagccaccccaatcccaccaaacccccaagctcgcttccactctcacc
cagatctacctcactgtcctctgggcactcctctgccaacgccctggcaggacccctccc
ccggccccgttgcactggtctgggggaccgccggccctacatgtctacaggtcagaggtc
agggagctggggcacctggccatgcaggggctggacaagggcaaaatcctcttcctgtct
gatgaacttagtccaaaacttctggaccttggcttaaggactggacttctctcacaggtg
gaggtgactctgcagaacgtttccagggggaagggcttcaccttcacccacctgaccctg
caggagttcctgtgtgccctccacatcatgaccagcgacaaggtcaacgagacccagctg
aagaggaagttcaacctcagaagccgctggaccaccagagctgaccccaagactgtcttc
accgactccctgcacctgtacatgtgtgggctggcttcacctgcctgcacccatactctg
gtcagactggcagagaaggctggggctcgggggagaactctgtctgggtctggttttggt
gctgagacctgcgtgaaaaagcaccaggcagtggtcctaaagctgctgaagagtcttgcg
ggcaaccccagtctgactggacccaaggtggtggagttgtaccgctgtgtgcaggagacc
cagaatgtagagctggtgagggaggtcgtggggtcacgaccctgcatggagctgagaaac
atccgcctgaaccctgtcgacttggacgccatcgcttttgtggtggcgtccgcgggagtg
gacttcgaccttgactttggagcatgctcaatggacctggagtgtctggatattctaccc
agctgtaaacacctgcaccatctcacgtttcggggcaggaagtacgatgaccggtttgca
gataagctgtcctccatcctgcccaagctgcccacactcaggaagctagagtttacgagt
gccaacctgactgatgtaggagctgccagactgagcaaagctctggaggaatgcccaaat
atcactgacatcaatttgagtgacaacagtctgtcagatgatgggatcagggaggtggct
gaggtcttctccagactgcccaacctggcctctgtcatgctggggggtaagaacagctgc
tctttgggaagcgtccttgcggttctagagaagaccagttcctctgccaacctcgaaagc
atttatgcagatggtaagaaggagatcaaggtcgtgttctccctgaagtcaagcatcagc
agccataatgacacacctggactcaccatcagactgctgaaccagaagatgaccgggcag
caggtcttaagactgtgtgagctcctggccagcttccctaccctctccgtcctggatctg
tcaggtggtctgtgggaggagaacagtctgcaggccctgactggagctctgcagcagctg
tccatcacacagagtctccttctgaacgacagctcactgtctgtggacgaactgctggcc
atgacctcactgctgtcccagtgtcccaatgtggtgacgatagacatcaggctaccagtc
catgtgtccgtggagttctctggaagcagacagacacacaaccctggagatgagacagaa
gccacaggtgtggtggtgggcaggaaactccgcatgcagggctgtggcctcctcccctct
cacctggagtgcctgactgacagtctggtgcgatgctctgacctcgcgctgctggatctt
tctcgtaactccctaggtaccaaaggtctacgggtgctcctggatctccttcctcagctc
agcaccatacagcagatacacctcggtgagaatgacgtgagcatggagggtgtatccctg
ctggctggggccctctgctcacaaagaaacctgtctgaagtctgtgtcagtgatggaggg
aagaagattgtgctcctgaagtttctccccagtacaggacaacagccctcagaccccagg
agctcaggtggtctggaccaggggaagaaactcggggtgatctccagtgctctgaaggct
tcagatgtgaccaacctttgcaggaagctactgcattgtcccagccccctggagatagat
ttgtctcacacgtctctgaaggatgaggctgtaggctcgctgcggacgttcctgccccgg
atgacaaccctacacacgctcaatctcagccacgcccacatgtccatcaatggagcgctg
ctattggtcagctgtctgggagactgccagcgggtcagagaggtggatctcaggtgtcag
ggagagtccttcatccggctgggcgagaagacagacagatgttcctgcaggttatctcag
tactctctgagctgtgccaacgtgaaaaagctgtctggcatcttgcaacaatgccccaac
ctgtctgacttggatttatccagtaacctactcatggatgagggcgtgaagacgtttgtg
gaatatcttccgaagttgcggattgccagctctgtcagcctgaatgataacagactgagc
aagcaaggtgcactccatctggtcagtgccatcctcagctgtgcccgggtttccttggta
gaactcagtttggggtctgaagagagattgttaatccgctttcaaccagacaaccactgt
ggtcaaactttgagtctgaacgcctgcagcttccaggcaggccagctcagcagactcgcc
aagatcctgtgcagctgtgcctcgcttgagaaactagagctgagggacaatggtctgggt
atgcagcaggtgatgggtctggtggaacagctgagttgtgaccacagacagcgctccgta
agtgttaaggagcactgggtcggtgcacagaccgctgttgagctggtgtcatcctgcctg
gagctgaaccccaacatacacatcctcagggtgaaccactccacactccacatcaccctg
gaggacaagacagagttctaccggtccagcagagggtcttctggctgtttgcctgtggtc
aaaatcagcctggttgacagtgcagagtcaaggctccacctagaggccatgagcagcgtt
ctccagaggtgtgctttcctgcaggatctgcttctgtctggctgcagcctgggtagagag
ggggtaaaggtgctctgctccgccatgcccttcctggcccgtctcactacactcagtctg
gactctaaagaaatgtgtgaggatgtggtgattctcctggctgaggggctactgcacacc
aagaccttacacaacctgaagctgactggtcatgtgatctcagacataggagttgaggcc
ctggtccgggccctcaggggcctgcctgctctgacatcagtggatctttctctgtgttct
ggttggacggccgcagggggggtggagcttatgagcggactgggacagtgtgtcttccta
cagcatatcagcctggactttgtctctctggatgagcagagcctctcccgcctggcccag
ggtctccctcacctctcctctctcaggacgctcaatctgaacaatgtgatggtgaggagc
tcatcagaagaccaggctgttgtgctcctcttggcctctctgaagggactcacatacctc
gaggagatagagttggactgtttgaggatgggtgatggaggagtggaggagctgaccaga
catgtgaccgcctgggctcagctgagaaaactcaggctgtcccagaaccttgttagtgac
caggcaggggacaagctgctccaagctctgtcttcctgttcacacctccaggaattgcaa
ttgtccaggaacagcctcggtgtggctagtgctgcaaggatagcccaggttctaccctcc
cttacgcacattacagttctagatctgtcagagaacaagtttggtgctgagggatctgcc
agcctttccaaagccctggtctccatgaagagcctggtcaagctacacctgacctccata
ggaaccccagacctcgctagcctggctgccagcctggatcactgtgtttctgtacaggat
gtgagtttggcatggaatggttgtcaggacgacgtcgctgtagagctagccaatgttctg
cctaggtgtctgaagctacagagattggacctcgaggcaaatgacatcagcattgctgga
gcagagactctggtcagaagcttgaaatcctgcccctctctccagctgctcaggttgtgg
aagaacaggatttctcaaagtgacgcttgtaggctcacacagaaggaccaaagagtgaac
ttctcatcaacatga
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