Osmerus eperlanus (European smelt): 134021098
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Entry
134021098 CDS
T10927
Symbol
roraa
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
oep Osmerus eperlanus (European smelt)
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oep03000
]
134021098 (roraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
oep03310
]
134021098 (roraa)
Transcription factors [BR:
oep03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
134021098 (roraa)
Nuclear receptors [BR:
oep03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
134021098 (roraa)
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
AAA_17
Motif
Other DBs
NCBI-GeneID:
134021098
NCBI-ProteinID:
XP_062317572
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Position
5:complement(10798582..10959615)
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AA seq
519 aa
AA seq
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MESPPDPASDPGNSASEPATPVRETPVNLETLRKADHPVPIRRQTCSSTNRGISVTKKTH
TSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDRTSRNR
CQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQRDHQQQPGEAEPLTP
TYGLSTNGLTELHDDLSGYMDSHTPDGSKPDSAVSSFYLDIQPSPDQSGLDINGIKPEPI
CDFAPGSGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHMETCQYLREELQQMTWQAFL
QEEMESYQNKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVV
FVRMCRAFDSQNNTVYFDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSEDEIALFS
AFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCSRH
TEKLTAFKAIYPDIVRAHFPPLYKELFGSDFEQSMPVDG
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggagtctcctccagatccagcaagcgacccgggcaacagcgcttcagagccggctacc
ccggtcagggaaaccccggtaaacctggagacgctccgaaaagcggaccatccagttccc
attcgaaggcagacctgttcaagcaccaatagaggtatctcagtaacaaagaagacacac
acctctcaaatcgaaataattccttgcaagatctgtggagacaaatcatcaggcatccat
tatggcgtgataacatgtgaaggctgtaagggcttcttcaggaggagtcagcagagcaat
gccgcctactcctgcccccgtcagaagaactgcctgatcgaccgaaccagccgcaaccgc
tgccagcactgccggctgcagaagtgtctggctgtgggcatgtcccgggacgcggtgaag
tttgggcgcatgtccaagaagcagcgcgacagcctgtacgccgaggtccagaagcaccgg
ctgcagcagcagcagcgcgaccaccagcagcagccgggcgaggccgagcccctcaccccc
acctacggcctctccaccaacggcctcaccgagctccacgacgacctcagcggctacatg
gacagccacaccccagacggcagcaaaccagactctgcggtcagcagcttctacttggac
atccagccctcccccgaccagtccggcctggacatcaatggcatcaagcctgagcccatc
tgcgactttgcccccggctctggcttcttcccctactgctccttcaccaacggggagact
tctcccaccgtttccatggctgagctagagcacctggcccagaacatctccaagtcccac
atggagacgtgtcagtacctgagggaggagctgcagcagatgacctggcaggccttcctg
caggaagagatggagagctaccagaacaagcctcgggaggtgatgtggcagctgtgtgcc
ataaaaataacagaggccatccagtacgtggtagagttcgccaagcgcatcgacggcttc
atggagctgtgtcagaacgatcagatagtgctgctgaaagcaggctctttggaagttgtg
tttgtgagaatgtgccgtgccttcgactcgcagaataacacagtctatttcgatggaaag
tatgctggtcccgatgtgttcaagtcattaggttgtgacgacttgatcagctccgtcttc
gagttcgggaaaaacttgtgttctatgcacctgtctgaggatgagatcgccctgttctcc
gctttcgtgttgatgtctgcagaccgctcctggcttcaggagaaggtaaaggtggagaaa
ctccagcagaagatccagctggctctccagcatgttcttcagaagaaccacagagaagac
ggcatactcacaaagttgatatgcaaagtgtcaacactgcgagcgctgtgcagcaggcat
acagagaagctgacggctttcaaagcaatatacccagacattgtgcgcgcccacttcccc
cccttatacaaggagcttttcggatcggactttgagcagtccatgcctgttgacgggtaa
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