Osmerus eperlanus (European smelt): 134021268
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Entry
134021268 CDS
T10927
Name
(RefSeq) LOW QUALITY PROTEIN: laminin subunit beta-1-like
KO
K05636
laminin, beta 1
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04510
Focal adhesion
oep04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134021268
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134021268
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
ATG17_like
Motif
Other DBs
NCBI-GeneID:
134021268
NCBI-ProteinID:
XP_062317907
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Position
5:complement(15460712..15488914)
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AA seq
1785 aa
AA seq
DB search
MLIFHIAPLLFAGTCVLAQVPEFSDVCTEGSCYPATGDLLIGRAHQLSASSTCGRQRPEP
FCIVSHLQEEKKCFVCDSTGRYVEQSNQTNGHRVENVVTTFAPYRLKTWWQSENGVQNVT
IQLDLEAEFHFTHLIMTFKTFRPAAMVIERSADFGKTWQVYRYFAYDCEASFPSVSHGPM
HKVDDVICDSRYSDIEPSTEGEVIFRVLDPAFRIEDPYSPRIQNMLKITNLRVKFTKLHT
LGDNLLDSRVEIKEKYYYAIYDMVVRGNCFCYGHASECAPVSGKGQEVEGMVHGHCMCNH
NTMGLNCEKCQDFYHDLPWRPAEGRNTHACKMCNCNQHSNSCHFDMAVYLSTGSVSGGVC
DDCQHNTMGRQCEQCKPFFYQHPERDVRDPNICEPCNCDPVGSLNGGVCDKSTDVHYGLI
AGQCRCKPNVEGERCDQCKQAHYGLANHPLGCLACTCNALGTVPGGSPCDTDSGDCYCKR
LASGRDCDQCMPEHWGLSNDMDGCRPCDCDLGGAVNNECSQETGQCVCRDHMFGRRCDQV
ESGFYFIALDHYTYEAEDAKFGPGVTVVQRPHPQDRSPTWTGVGFVNVPEGAFLEFSIDD
VPHSMEYDILIRYEPQLPDQWEEVLMTVMRPGVITADSRCANTMPDDDNQMISLHPGSRY
VVLPRPVCFETGLNYTVRLSLPLYSALSDVQSPYTLIDSIVLMPHCKNLDIFSESGRGDL
SGTSNAWDTFQRYRCLENSQSVVKTPSTDICHNFIFSISALLHQGARACQCDPQGSLSTV
CDPSGGQCQCRPNVVGRNCDKCAPSTYLFGPNGCRSCDCNPQGSEHSFCHEATGQCPCVP
GAYGRQCDRCLPGHWGFPSCRPCSCNGHAEDCDPFSGQCLACREHTTGHSCERCLGGYYG
DAELGSGDHCRACMCPDGPGSGRQFSDGCYLRQDSNQVFCMCSPGYRGARCDECAPGYYG
NPHENGGRCQPCQCNNNIDMQDPGSCDXHTGVCLKCLYHTEGQACHSCSLGYYGDALMQN
CRKCVCNRLGTNPTTCPSAGDCHCDLGSGQCQCLANLVGQHCDQCAPDTWNMASGRGCEL
CDCDPDHSFGTSCNELSGQCSCKPGFGGKTCRECRELFWGDPKVICRACDCDPRGIAEQQ
CDKASGHCVCVEGVSGPRCDVCSRGYSGQFPDCQRCHQCFADWDVIVGQLTNQTHRLVSK
VNTLKASGITGPYKQTIDNVEKSAGAIRTILAQNPATQPLSEIQQLLEQATDLMAEMSRK
LNQTEETLAQLTVDNNSTDTKLDSLKEDAQKLERTVKELMEQVEFIKNSDVRGASDSITK
YHLQSLAAEARANASTSGPGNPVENSATLRQATEDKLNQTKEEFLRRHDEHAKRLDDLAG
QMETLDLSELSEKTCGSPSGSEACSDSPCGGLSCVDTDGQRKCGGEGCSGLVTLADNAWQ
KVKDFDQEIVTAMEEVDKLSKMVSEAKVKADEAKLSAQDVLLKTNETKQRVDKSNEELRS
LIRQIRDFLTQDAADLESIEAVANEVLAMQMPTTPAQLQNLTNEIRERVGDLSHVETILN
QSADDIQRAESLLEQARRARKEATGVRDTAVKVKQALEEAGRAQTAAAEAIKQATTDIKG
TNDLLTSVESETADSEFQLNNATQRLLRLERDVTLLREKAQNTSLSAAQTETDAEDIKKV
AAEVKKDLDTELKNKYSTVDDLITQKAGGVSDAKKRAERLQQEAKDLLLQASDKLQLLKD
LEKSYEENQKTMEEKASQLVDLEKAVRDLLQEISNKVTVYSTCLF
NT seq
5358 nt
NT seq
+upstream
nt +downstream
nt
atgttgatttttcacattgcgcccctgctatttgcagggacgtgcgttcttgcacaggta
ccagaattcagtgatgtttgtaccgaggggagttgctaccctgcgactggggatctcctc
atcggcagagcccaccagctgtcggccagttcaacatgcgggcgtcaacgacccgaaccg
ttctgtatcgtcagtcacttacaggaggaaaagaagtgctttgtctgcgactccaccggg
cgctacgtggaacaatccaaccaaaccaatggacaccgcgtcgaaaacgttgttaccacg
ttcgccccctaccgcctcaaaacctggtggcagtcggaaaatggcgttcagaatgtgacc
atccagctggacttggaggcggagttccacttcacccacctcatcatgacctttaagacc
ttccggcctgcagccatggtgattgagcggtcagctgactttggaaagacatggcaggtg
taccggtactttgcctacgactgcgaggcctcgttcccctccgtgtctcacgggcccatg
cacaaggtggacgacgtcatctgcgactcacgctactctgacatcgagccgtcgaccgag
ggagaggtcatcttcagagtgttggaccctgcgttcaggatcgaagatccttacagtccc
agaatccaaaacatgctgaagatcaccaacctgagggtgaagttcactaagctgcacacg
ctgggagacaacctgctggattctcgcgtggagatcaaggagaaatactactacgccatc
tatgacatggtcgtccgcggcaactgcttctgctacggccacgcctccgagtgtgctcct
gtgagcgggaagggacaggaagtagagggcatggtccacggccattgcatgtgcaaccac
aacaccatgggtctgaactgtgagaagtgtcaggacttctaccacgaccttccctggaga
ccagcggaggggcgcaacacccacgcctgcaaaatgtgtaactgcaaccagcactctaac
tcgtgccacttcgacatggccgtgtacctgtccacggggagcgtgagcgggggcgtgtgt
gacgactgccaacacaacaccatgggccgccagtgtgaacagtgcaagcctttcttctac
cagcaccccgagagggacgtccgggaccccaacatctgcgaaccgtgtaactgtgacccg
gtgggctccctgaacggaggtgtctgtgacaaaagcacggatgtccactatggcctgatt
gcaggccagtgtcgctgcaagcccaacgtggagggggagcgctgcgaccagtgcaaacag
gcacactacggattggcgaaccacccgctgggctgcctggcctgtacctgtaacgccctg
ggcactgtccccggaggaagcccatgtgacaccgactctggagactgttactgcaaacgc
ctggcctctgggagagactgtgaccagtgcatgccggagcactggggcctcagcaacgac
atggacggctgcaggccatgtgactgtgacctgggcggggccgtcaataacgagtgttcc
caggagacaggtcagtgtgtgtgtagagaccacatgtttggccggcgttgtgaccaggtg
gagtcaggcttctacttcatagccctggaccactacacctacgaagcagaggatgccaag
ttcggacccggagtgacggtggtccagaggccacacccccaggaccgcagccccacctgg
acgggcgtggggttcgtcaacgtgcccgagggggccttcctggagttctccatcgacgac
gtcccccactccatggagtacgacatcctcatccgctacgagccccagctaccagaccag
tgggaggaggtgttgatgacggtgatgaggccaggggtgatcacggcagatagtcgctgt
gccaacaccatgccggacgacgacaaccagatgatctctctccaccctggctcacgctat
gtggttctccccagaccggtgtgttttgaaacagggctcaactacaccgtgagactgagc
cttcctctctactccgctctcagtgacgtacagtctccctacactctcatcgactcgatt
gttctcatgccccattgtaagaacctggatatcttctccgaatcgggccgtggcgacctc
agcggcaccagcaatgcctgggacacgttccagcgctaccgctgtcttgagaacagccag
agcgtggtcaagaccccctccaccgacatctgccataacttcatcttcagcatctcagcc
cttctgcaccagggagccagagcatgccagtgtgaccctcagggctctctcagcaccgtg
tgcgaccccagcggcgggcagtgccagtgtcggcccaacgtggttggcagaaactgtgat
aagtgtgccccctccacctaccttttcggacctaacggctgcagatcctgtgactgcaac
ccccagggctcggagcactccttctgccacgaggccacaggtcagtgcccgtgtgtcccc
ggagcgtacggccgtcagtgtgaccgctgcctgccaggccactggggcttcccctcctgc
cggccctgctcctgcaacggccacgccgaggactgcgaccccttctccggacagtgtctg
gcctgccgcgagcacaccaccggacacagctgtgaaaggtgcctgggcggttactacggc
gatgccgagctgggttccggcgaccactgccgtgcgtgcatgtgcccagacgggccgggc
agcgggcgccagttcagcgacggatgctacctccgccaagactcgaaccaggtgttctgc
atgtgctccccggggtacagaggtgccaggtgtgacgagtgtgccccaggttactatggt
aacccccacgagaacggcgggcggtgccagccttgccagtgcaacaacaacatcgacatg
caggacccggggtcctgtgacngccacacgggcgtctgtctcaaatgcctgtaccacacg
gagggccaggcctgccacagctgcagtctgggttactacggagacgctctcatgcagaac
tgcaggaagtgcgtgtgcaaccgcctcggtaccaacccgaccacttgcccctcggcgggc
gactgtcactgtgacctgggcagcgggcagtgccagtgtctggccaacctggtgggccag
cactgtgaccagtgtgcccccgacacctggaacatggccagcggcaggggctgtgagctc
tgcgattgtgaccccgatcactccttcgggacctcctgcaatgagctgagtggccagtgc
tcctgcaagccaggcttcggaggtaaaacctgccgggagtgcagggagctgttctggggc
gaccccaaggtcatatgcagagcctgtgactgcgacccccgaggcattgccgagcagcag
tgtgacaaggccagtggtcactgcgtgtgtgtggagggggtctccgggccacgctgtgac
gtttgctctcgtggctactccggccagttccccgactgccaacgctgtcaccagtgcttt
gccgactgggacgtcatcgtgggtcagctgaccaaccagacgcaccgattggtcagcaag
gtgaacaccctcaaggccagtggcatcacgggaccctacaagcagaccattgacaacgtg
gagaaaagcgccggtgccataagaacgattctcgcccagaacccggccacacagcctctt
tcagagatccagcagctgttggagcaggctactgatctgatggcagagatgagcaggaag
ctgaatcaaacagaagagactctggcccagttaacggtagacaacaacagcaccgacacc
aaactggactccctcaaagaggatgcccagaaactagaacgtaccgtcaaggagctgatg
gagcaggtggagttcatcaagaactcggacgttcgaggggcttcagacagcatcaccaag
tatcacctgcagtccttggcggccgaggctcgtgctaatgcctccaccagcggccctggc
aaccctgtggaaaactcagctacgctacggcaagccaccgaggacaaactgaaccagacc
aaagaggagttcctccggagacacgatgaacatgccaagagattggatgacctggcagga
cagatggagactctggacctatcagagctcagtgagaagacatgcggcagcccctccggg
tccgaggcctgctccgactccccgtgtggcggcctgagctgtgtggacacggatggccag
aggaagtgcggcggcgaaggctgcagtggcctggtcaccctggcggacaacgcctggcag
aaagtcaaggacttcgaccaggagatcgtcaccgccatggaggaggtggacaagctctcc
aagatggtatccgaagctaaagtgaaggcagacgaggccaagctgagtgcccaggacgtc
cttctgaagaccaacgagaccaagcagcgcgtggacaagagcaacgaggagctacgcagc
ctcatccgacagatacgagacttcctcacgcaggacgcggctgacctggagagcatcgag
gcggtggctaatgaagttctggccatgcagatgcccaccaccccggcccagctgcagaac
ctgaccaatgagatccgggagagggtgggagacctgagccacgtggagaccatcctgaac
cagagcgccgacgacatccagagagccgagagcctgctggagcaggcacggagggccagg
aaagaggcgacaggcgtgagggacacagcagtgaaggtgaagcaggctctggaggaagct
gggcgcgcccagacggcagcagcagaggccatcaaacaggccaccaccgacatcaaagga
accaacgacctgctgacctcggtggagtcagagacggctgactctgagtttcagctcaac
aacgccacccagaggctgctccggttggagcgagacgtcacgctgctaagagagaaagcc
cagaacacatcgctgagcgccgcgcagacggagacggacgcggaagacatcaagaaagta
gcggccgaggtcaagaaggacttggacacagagctgaaaaacaagtacagcacagtggac
gacctgatcacgcagaaggctgggggcgtgtccgacgccaagaagagggcggagcgactc
cagcaggaagctaaagacctgttgctccaggccagcgacaagctgcagctactgaaagat
ttggagaagtcctacgaggagaaccagaagactatggaggaaaaggccagtcagctggta
gacctggagaaggctgtgagagatctcctccaggagataagcaacaaagtcaccgtctac
agcacctgtctgttctaa
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integrated database retrieval system
