Osmerus eperlanus (European smelt): 134021285
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Entry
134021285 CDS
T10927
Symbol
lrrc4ca
Name
(RefSeq) leucine rich repeat containing 4C, genome duplicate a
KO
K07523
netrin-G1 ligand
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
134021285 (lrrc4ca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
oep04515
]
134021285 (lrrc4ca)
Cell adhesion molecules [BR:
oep04515
]
Immunoglobulin superfamily
NGL family
134021285 (lrrc4ca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
V-set
LRR_14
Ig_2
LRR_9
LRRNT
DUF7617
Sp38
Ig_6
Mid2
DUF6821
Syndecan
Motif
Other DBs
NCBI-GeneID:
134021285
NCBI-ProteinID:
XP_062317931
LinkDB
All DBs
Position
5:complement(15897473..15945370)
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AA seq
645 aa
AA seq
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MLNKMTSSRQLQMMRGPRWNRALSDPLFVLLLALQLLVVAGLVRAQTCPSVCSCSNQFSK
VICTRRSLRDVPDGISTNTRYLNLQENLIQVIKVDSFKHLRHLEILQLSKNHIRTIELGA
FNGLASLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDL
GELKRLTYISEGAFEGLSNLRYLNLGMCNLKEIPNLIPLVKLDELEMSGNQLSVIRPGSF
KGLIHLQKLWMMHAQIQTIERNSFDDLQSLVELNLAHNNLTLLPHDLFTPLHHLERVHLH
HNPWNCNCDILWLSWWLKEMVPANTSCCARCSSPSSHKGRYIGELDQNYFHCYAPVIVEP
PADLNVTEGSAAELKCRASSLTSVSWITPNGSIMTHGAYKIRISVLNDGTLNFTNVTMQD
TGTYTCMVSNSAGNTTASATLNVSSTDSSFSYFTTVTVETIEPPHNEGQPTVQLKVGPTA
SAGWESVSSTSTTTTTVRTPLSTRATEKTYTIPVTELGGEGSLNGLDEVMKTTKIIIGCF
VAITLMAAVMLIIFYKMRKQHHQQNHHAPTRTIEIINVDEDCVTGGPAMESHLTLPPLEH
EHLNHYNTYKTAYNHASTINSIHSSAHEPLLIRASSKDNVQETQI
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgttgaacaagatgacctcctctcggcagctgcagatgatgagaggtcctaggtggaac
cgggccctgtccgaccctttatttgtgcttctcctggccctccagctactggtggtggca
ggcctggtccgtgctcagacctgcccctcagtctgctcttgcagcaaccagttcagcaag
gtcatctgcacccgccgcagcttgcgagatgtcccagatggcatatccaccaacacgcgc
tacctgaacctgcaagagaaccttatccaagtcatcaaggtggacagcttcaaacacctg
cggcacctcgagattctgcagcttagcaagaaccacatccgtaccattgagttaggggcc
ttcaacgggctggccagcctcaacaccctggaactgtttgacaaccgcctcaccaccatc
cccaacggggccttcgagtacctctccaaactgaaggagctgtggctgaggaataacccc
atagagagcatcccctcctatgcgtttaacagggtgccctcgctacggaggctggacctg
ggggagctcaagcgcctcacatatatatcagagggggcctttgaggggcttagcaatctg
cgctacctgaacctgggcatgtgcaacctgaaggagatccccaacctcattcccctggtg
aagctggatgagctggagatgtcagggaaccagctgtccgtcatccggcctggctccttc
aaaggtctcatccaccttcagaagctgtggatgatgcatgctcagatccagaccatagag
aggaattcctttgatgacttgcaatccctggtagagctcaacctcgcccacaataacctc
accttgcttccccatgacctcttcacccccctgcatcaccttgagagggtgcacttacac
cacaacccctggaactgtaactgtgacattctttggctcagctggtggctcaaggagatg
gtgccggccaacaccagctgctgtgcccgctgcagttcaccctccagccacaaggggcgc
tatatcggagagctcgaccaaaactattttcattgctatgcgcccgtgatcgtggagccc
ccagcggacctgaacgtgacggaggggagcgcggcggaactgaaatgcagggccagctct
ctgacctcggtcagctggatcacacccaacggctccatcatgacccacggagcctacaag
atccgcatctccgtcctgaacgacggcactctcaacttcaccaacgtcaccatgcaggac
acgggcacttacacctgcatggtgagcaactcggcgggcaacaccacggcgtcggccacg
cttaacgtgtcgtccacagacagcagcttcagctacttcaccacggtcacagtggagacc
atagagccaccgcataacgagggccaacccactgtgcagctgaaggtgggtcccaccgca
tctgccggctgggagtcggtgtcgtccacctccaccacgaccaccaccgtgcggacgcca
ctctccaccagggccacggagaagacctacaccattccggtgacggagctggggggggag
ggctccctcaacggcctggatgaggtgatgaagaccaccaagataatcatcggatgcttc
gtggccatcaccctcatggcggcggtcatgctgatcatattctacaagatgcgcaagcag
caccaccagcagaaccaccacgcgcccacccgcaccattgagatcatcaacgtggacgag
gactgcgtgacggggggtccagccatggagagccacctaacgctgcccccactggagcat
gagcacctcaaccactacaacacctataagactgcttacaaccacgcctccaccatcaac
tccatacacagctcggcgcacgaacccttgttaatccgggccagctctaaagacaatgta
caagagacccagatataa
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integrated database retrieval system
