Osmerus eperlanus (European smelt): 134021885
Help
Entry
134021885 CDS
T10927
Symbol
hcfc1a
Name
(RefSeq) host cell factor 1a isoform X1
KO
K14966
host cell factor 1
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03083
Polycomb repressive complex
oep04980
Cobalamin transport and metabolism
oep05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
134021885 (hcfc1a)
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
134021885 (hcfc1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
134021885 (hcfc1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
oep01009
]
134021885 (hcfc1a)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oep03036
]
134021885 (hcfc1a)
03029 Mitochondrial biogenesis [BR:
oep03029
]
134021885 (hcfc1a)
Protein phosphatases and associated proteins [BR:
oep01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
134021885 (hcfc1a)
Chromosome and associated proteins [BR:
oep03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
134021885 (hcfc1a)
HMT complexes
COMPASS/SET1 complex
134021885 (hcfc1a)
MLL-HCF complex
134021885 (hcfc1a)
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
134021885 (hcfc1a)
Mitochondrial biogenesis [BR:
oep03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
134021885 (hcfc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_HCF
Kelch_KLHDC2_KLHL20_DRC7
Beta-prop_FBX42
Beta-prop_ATRN-LZTR1
Kelch_1
fn3
Kelch_FKB95
Motif
Other DBs
NCBI-GeneID:
134021885
NCBI-ProteinID:
XP_062318963
LinkDB
All DBs
Position
1:complement(15324311..15339016)
Genome browser
AA seq
1628 aa
AA seq
DB search
MSSSGSIVSGTTGAVLQPRWKRVLGWSGPVPRPRHGHRAVAIKELMVVFGGGNEGIVDEL
HVYNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLFELQASRWE
WKKLKPKAPKNGPAPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYTLELR
AGSSVVGWDIPITYGILPPPRESHTAVVYTEKTSKKSRLIIYGGMSGCRLGDLWSLDIET
LTWTKPSVNGTSPLPRSLHSATTITNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACL
NLDSMYWETVVMDTLEDNIPRARAGHCSVAINSRLYVWSGRDGYRKAWNNQVCCKDLWYL
ETERPHAPARVQLVRANTNSLEVSWGAVSTADTYLLQLQKYDIPSAPAATSPALSATPSL
PGSSPRSPAPAAAAPSAQSLPHTAILKVAAPQSSTGASIVTVRPNQVGKSPVTVTSLPAG
VRMVMPVQTTQGAPIGSSPQMSGMAALAAAAAATQKIPPSSPGTVLGLPAGATIVKSVAV
SPGSTTVKMASPVMVSNPATRMLKTAAAQVGTSSVSSLNTTTRPIITVHKSGTVTVAQQA
QVVTTVVGGVTKTITLVKSPLTMGSSGTLQISNLGKMMSVVQTKPVQTSAVTGQVSTNPL
TQIIQTKGPLPAGTILKLVTSADGKPTTIITTSQAGTGNKPTILNISGMSPTTTKQGTTI
IKTIPMSAIMTQPGATGVTSSAGMKTPITILTTKMMTTGTAGKIITAMPKLGSAAGQQGL
TQVVLKGAPGQPGTILRTVPMGGVRVVTPGTVSAVKPTVTTLVVKGTTGVTTLGTVTGTV
STSLAGGSVASANASLATPITTLGTIATLSSQVINPTAITVSAAQTSLTTASSLPSSTIT
MQSVPQPTQVTLITTPSGVEAQPVQDLPVSILASPTSEQPSSTEAGSGDGTGTVTLVCSN
PPCETHETGTTNTATTASSNMGGVQRACSNPPCETHETGTTNTSTQASSSMGTGQTGTVQ
RVCSNPPCETHETGTTNTSSTATSSMGGNETTTGTGSVQRVCSNPPCETHETGTTNTATT
ASCNMEPGEGTAQQSDEGAGSATNTEVPSTTASATSAEVPSTTASATSAATTTTQGRAIT
TVTQSTPAPGPSVPSISSISAAASTEEPMQTEDAASAAAVPMEEGGMHSQMGADAAVGLP
PELMSEGQGATLMVTGLSAEELAVTAAAEAAAQAAATEEAQALAIQAVLQAAQHAVMNEG
ESGSDGQQSTTIPIVLTQQELAALVQQQQQLQQAQAQAAVQQQAAAPQASLPTEGLAPAD
SLNDPAAESNGHNEMAAAVTSAVASLLPRTSETLAPSSTFALATVASPAKLQAATALTEV
ANGIEGGKQTPQPVPMKSLVKKENQWFDVGIVKVTNMVVTHFYMPGDDSQVEDDSGNMPD
YTQMKKMELQSGTAYKFRVAGINACGRGAFSEISAFKTCLPGFPGAPCAIKISKSPDGAH
LTWEPPSVTSGKIIEYSVYLAIQSSQTAEPKASTPAQLAFMRVYCGPNPSCLVQSSSLSN
AHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQESSKDGASAKPAPKRPVSSPDVSKAIG
QKKARTDQ
NT seq
4887 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttccggttccattgtttctgggaccactggtgccgttttgcaaccgcgatgg
aagcgagttcttggatggtctggtcctgtccctcgtcccaggcatggacacagagccgtt
gcaataaaggaattgatggttgtgtttggaggaggtaacgaaggaatcgttgacgaatta
cacgtgtataatacagcaacaaaccagtggttcatccctgcagttcggggtgacattccc
ccaggctgtgctgcatacggatttgtttgtgatggcaccagactgttggtgtttggcgga
atggtggagtatggaaagtacagcaatgatctctttgagttacaggccagtcgatgggaa
tggaaaaagttgaaacccaaggcccccaaaaatggtcccgcaccttgtcctagacttggc
cacagtttttccctagttgggaacaaatgctacctatttggtggactggcaaatgatagc
gaggacccgaaaaataacattcccagatacctgaatgatctgtacacgttggagcttcgt
gctgggtccagtgtggtgggctgggacatccccatcacatacggcatccttcctcctcct
cgtgagagccacactgctgtggtgtacacagagaaaaccagcaagaaatctcgccttatc
atctatggagggatgagtggctgtcgcctaggggatttatggagccttgacattgagacc
ctgacctggaccaaaccatcagtgaatgggacatccccactgcccaggagtctccattct
gccactaccattacaaacaagatgtatgtgtttgggggatgggttccactggttatggat
gatgtcaaggtggccacacatgagaaggaatggaagtgcacaaacacactggcctgcctg
aatcttgactccatgtattgggaaacagttgtgatggatactctggaggacaacatccct
cgggcccgtgcaggacattgctctgtggctattaactccaggttgtacgtttggagcgga
cgagatggttaccggaaggcttggaacaaccaagtttgctgcaaagacctctggtacctt
gagacagagaggccccacgctccagcgagggtgcagcttgttcgtgccaacaccaactct
ctggaggtcagctggggagcagtatccacagcagacacatacctgctgcagctccagaag
tatgacatcccgtctgctccagctgcaacatcaccagctctcagcgccaccccgtccctg
ccagggagctctcccaggagtccagccccggccgccgctgctccgtctgcccagagcctt
ccacacacagccatcttgaaggttgcagctcctcagtctagcactggggcatctattgtc
actgtgcgcccaaatcaggttggtaaatcgcctgtcactgtgacatcacttcctgcagga
gttcgcatggttatgcctgtccaaaccacccaaggagcgccgattggcagcagccctcag
atgagtggcatggcagcgttagctgcagctgcagcagccactcagaagatcccaccctca
tcaccaggcaccgtgctcggccttccagcaggtgccactattgtcaaatcagtggcggtc
tctcctggctcaaccacagtcaaaatggcatctccagtcatggtgagtaacccagccacc
cgtatgctgaagactgctgcagcacaggtgggcacgtccagtgtgtcttctctcaacacg
accacgcgacccatcatcactgtgcacaagtctggcaccgtcactgtggcccagcaggct
caggtggtcaccacagtggtgggaggagtcaccaagaccatcaccctggtcaagagcccc
ctgaccatgggaagcagcggcacactgcagatctccaaccttggcaagatgatgtctgtg
gtgcaaaccaagccagtgcagacatcagctgttacaggccaggtttccactaaccctctc
acacaaatcatacagacaaagggtcccctcccagctggcaccatcctgaagctggtgacc
tcagcagatggcaagcccaccaccatcatcaccacctcccaggcaggcacagggaataaa
ccaaccattctgaacatcagtggcatgtcgccaaccacaaccaagcagggcaccacaatc
atcaagaccatccccatgtcagctatcatgacccagcctggagccacaggtgtgacgagc
agtgcaggaatgaaaacgcctatcaccatcctcaccaccaagatgatgaccactggcact
gctggcaaaattataacggccatgcccaagctgggatctgcagctggccagcagggactg
actcaggtggttctgaaaggcgctccaggccaacctggcaccatcctgcgcactgtgccg
atgggaggagtcagagtggtcacccctggtaccgtgtctgcagtcaagcccactgtcact
acgctggtcgtcaagggaacaaccggtgtcacaactctggggaccgtcacaggcactgtc
tccaccagcctggcagggggcagcgttgctagtgccaatgcctccctggccactccaatc
accacattaggcaccattgccactttgtccagccaggtcattaaccccactgccatcact
gtgtcagctgctcagacaagcctgaccacagcctcctctctgccctcatccactatcacc
atgcagtctgtaccccagcccacccaggtgactctcattaccacccccagtggggtagag
gcccagccagtgcaggacctccctgtgtccatcctggcctcgcctacctctgagcagccc
agctccacagaggctggatctggggatggtactggcactgtcaccctggtctgctccaac
cccccctgtgagacacatgagacaggcaccaccaacaccgctacaacagcctcctcaaac
atgggcggggtgcagagggcctgctccaaccctccctgtgagacacatgagacaggcacc
accaacacttctactcaggcctcgtctagtatgggtactgggcagactggcactgtgcag
agagtgtgttccaacccgccatgcgagacccacgaaacggggaccaccaacacctcttcg
acagccacatccagcatgggtggcaatgagacaaccacaggaacaggatcagtgcagagg
gtgtgctctaaccctccctgtgaaacccacgagacaggcaccacaaatacggccaccact
gcctcttgcaacatggagcctggcgagggcacagcccagcagagtgacgaaggagctgga
agtgccaccaacacagaggtcccctctaccacagcatcagctaccagcgcagaggtcccc
tctaccacagcatcagctaccagcgcagccaccaccaccacccagggcagggccatcacc
acggtgacccaatccaccccagcccctggaccctcagtaccttctatttcgtccatcagt
gcagccgcctccacagaagagcccatgcagaccgaggatgctgcatcggcggcagctgtg
cccatggaggaggggggcatgcactcacagatgggagcagatgcagccgtgggtctgcct
ccagagctgatgtcagagggccagggcgccaccctcatggtgacggggctctccgctgag
gagctggccgtcactgcagcagctgaggcagcggcccaggctgctgccacggaggaggcc
caggcgctggccatccaggctgtcctccaggctgcacagcacgctgttatgaacgagggg
gaatcaggctcagatggccagcagtccaccaccatccccatcgtgctgacccagcaggag
ttggcagccctggtgcagcagcagcagcagctgcagcaggcccaggctcaggcagccgtc
cagcagcaagcagctgccccccaggccagcctgcccactgagggcctggccccagcagac
agcctcaatgatcctgccgcagagagcaacgggcacaacgagatggctgctgccgtcacc
agcgctgtggcctcgctcctgccacgcacctctgagactctagccccctcgagcacattt
gcactggcaactgtggccagtccagccaagctgcaagctgctactgcattaactgaggtg
gccaatggcattgagggcgggaaacaaacccctcaaccagtccctatgaagagccttgta
aaaaaagagaaccagtggtttgatgttggaattgtgaaggtgacaaacatggtggtcacc
cacttttatatgccaggagatgactctcaagtagaggatgactcgggcaacatgccagac
tacactcagatgaagaaaatggagctgcagtctggcacagcctacaagttccgtgttgct
ggcatcaacgcttgtggtcgtggagctttctcggagatctcggctttcaagacctgccta
ccaggcttccctggggcaccgtgtgccatcaaaataagcaagagtccagatggagcccac
ctgacctgggagcctccctctgtgacgtcagggaagattattgagtactcggtatacctg
gccattcagagcagccagacagccgagcccaaggcctccacccctgcccagctggccttc
atgcgcgtgtactgtgggccaaacccttcctgcctggtgcagtcctccagcctctccaat
gcccacatcgactacaccaccaagccagccatcatcttccgcattgcggcccgcaatgaa
aagggctacggccctgctacacaagtcagatggctgcaagagtccagtaaagatggcgcc
tcagctaaacctgccccaaaaagaccggtatcttcacctgatgtgagtaaggcgattggt
caaaagaaagcaagaacggaccagtaa
DBGET
integrated database retrieval system
