Osmerus eperlanus (European smelt): 134022301
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Entry
134022301 CDS
T10927
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
oep Osmerus eperlanus (European smelt)
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oep04121
]
134022301 (pdzrn3b)
Enzymes [BR:
oep01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
134022301 (pdzrn3b)
Ubiquitin system [BR:
oep04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
134022301 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Sina_ZnF
Prok-RING_4
PDZ_Tricorn
zf-TRAF
zf-rbx1
LemA
RING_XB3-XBAT31
U-box
TRAF3_RING
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
134022301
NCBI-ProteinID:
XP_062319705
LinkDB
All DBs
Position
1:complement(16073825..16126581)
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AA seq
1053 aa
AA seq
DB search
MGFELDRFKGAVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQSSCPVKCQRIS
TKELNHVLPLKNLILKLDIKCDNYARGCEKVVKLQNLAEHAEMCDYSPAKCRIKGCNEVL
NLKDMDAHMRETCDYRPVGICENGCGLMLTYKEQKLNHCCLKALKAHNSTLHGKVVSLDK
EFKKQSLKSNKREKSLLAQLSAVHNELQMTALKYQKKFTEYSARIDSLTKTLAPPCKGGD
TKTITAILHREGGSLGFNIIGGRPCPDDNDGTSNEGIFVSKIVDSGPSDKEGGLQIHDRI
MEVNGKDLSKATHDQAVEAFRTAKDPIMVQVLRRAPRPKPANPGPDTQVVDISTQTDITF
QHIMALTKLPASSPTMAVLEQYLLPEEHPPGHAYFDPNVFLEGIQQEMEREELEYEEVDL
YRANIQDKLGLTVCYRTDDEDETGIYVSEIDPNSIAAQDGRIREGDRIIQINGIEIQNRE
DAVALLTSEENQNVCLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEQQHHQAMQFTASM
LQQKKREEDGGTTDTATLLSTHHEKDSGVGRTDESTRNDESSEQENMGDDQTTASNTLGS
SRRKLAYSQDTLGSADLPLSGESFISADYADVDFLGIPADECERFRELLELKCQVRSAAG
PGLYCQGGGGASEQEGVDKELELLNEELRSIELECLNIVRAHKMQQLREQYRESWMLHNS
GFRNYNTSIDARRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLRRGDP
NQEEAGASGTAGLNMRIPKPLLSPVQEAGGAVRGRASSSKEAEGDLQPDGKEQNVLGEPS
KPGRSSMLGQNHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCRDPVSPG
DLEAKMEWKVKIRSDGTRYITKRPVRDKLLKERALRIREERSGMTTDDDAISELKMGRYW
SKEERKQHAVRAKEQRQRREFMKQSRADCLKDQASQDDKKEPNIIELSHKKMNKKRNKKI
FDNWMTIQELLTHGTKSPDGTRVYNSLLSVTTV
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atgggatttgagttggatcgatttaaaggggctgtggacccagatttcaaatgcaacttg
tgcaataaagttctagaagacccgcttactactccgtgtggtcatgtcttctgcgctgga
tgtgtgctgccttgggttgtccagcagagcagctgtccagtgaagtgtcaaaggatctct
acgaaagagcttaaccacgttctccctcttaaaaatctgattttgaagctggacattaag
tgtgacaattatgcaaggggttgtgaaaaagtagtgaagctgcaaaatttggcagagcac
gcagagatgtgtgattactcgccggccaaatgcaggattaaaggatgcaacgaagtattg
aacctgaaggacatggatgcccatatgcgcgaaacgtgtgattacagaccagtcgggata
tgcgaaaatggatgtggattgatgctcacctataaagagcaaaaacttaaccattgctgt
ttgaaagcgctcaaagcccacaacagcactttacacggaaaggtggtcagtttggacaaa
gagttcaagaagcaatctttgaaatccaacaagagagagaagtcacttctcgcgcaactg
tctgctgtccacaacgagctacaaatgacagcattgaaatatcaaaagaaatttactgaa
tatagtgcaaggatcgactcgctgaccaagactctggctcctccgtgcaagggaggggat
accaaaaccatcacagcaatcctccaccgggagggggggtctcttggattcaacattata
ggaggaagaccatgtccggatgacaatgatggcacttcaaatgaaggaatctttgtatcc
aagatagtggacagtgggccctcggacaaggaaggaggccttcagatccatgacagaata
atggaggtcaacgggaaggacctgtccaaagccacccatgaccaggcggtggaggccttc
cgcactgccaaagatccaatcatggttcaggtgctccgccgtgcccctcgccccaaacct
gccaaccccggccccgacacccaggtggtggacatcagcacccagacggacatcaccttc
cagcacatcatggccctcaccaagctgccggcctccagccccaccatggctgtgctggag
cagtacctgctgccggaggagcaccccccaggccatgcatacttcgaccccaatgttttc
ctggagggcatacagcaggagatggagcgcgaggagctggaatacgaggaagtggatttg
tacagagccaacatccaggacaagcttggcctgaccgtctgctacagaactgatgatgag
gacgagactggcatctatgtcagtgagattgatccaaacagcattgctgcccaagatggc
cggatcagagagggggacaggattatccagatcaatggcatagagatccagaaccgtgag
gatgcagtagctctgctgaccagtgaggagaaccagaacgtctgtctcctggtggccagg
cctgagatccagctggatgagggctggatggacgacgacaggaacgacttcctggacgac
cttcacatggacatgctggagcagcagcaccaccaggccatgcagttcaccgccagcatg
ctgcagcagaagaagcgcgaggaggacggtgggacgacggacacggccacgctgctctcc
acgcaccacgagaaggacagcggcgtcggccgcaccgacgagagcacgcgcaacgacgag
agctccgagcaggagaacatgggcgacgaccagaccaccgcctccaacacgctgggcagc
agccgcaggaagctggcctacagccaggacaccctgggcagcgccgacctgcccttgagc
ggcgagtccttcatctccgcagactacgccgacgtcgacttcctgggcatccccgccgac
gagtgcgagcgcttccgggagctgctggagctgaagtgccaggtgcggagcgcggccggg
ccgggcctgtactgccagggcggggggggggcctccgagcaggagggcgtggacaaggag
ctggagctgctgaacgaagagctgcgcagcatcgagctggagtgcctgaacatcgtccgc
gcccacaagatgcagcagctgagggagcagtaccgcgagtcgtggatgctccacaacagc
ggcttccgcaactacaacacgagcatcgacgcgcgccgccacgagctctctgacatcact
gaactgccggagaagtcggacaaggacagctcgagcgcctacaacaccggggagagctgc
cgcagcacacctctcaccctggagctgtctccggacaactctctacgccgtggagatcca
aaccaagaggaggccggggcttcgggcactgctggcctcaacatgaggatccccaagccc
ctgctctctcctgtccaggaggctggaggcgccgtgagaggcagggcctcttcctcgaag
gaggcagagggagacctgcagccagacgggaaagagcagaacgtgctgggagagccaagc
aagcctgggaggagctcgatgttagggcagaaccactccccatacaaacatgcccacatt
cccgctcacgcacagcactaccagagctacatgcagctgatccagcagaagtccgcggtg
gagtacgcccagagtcagatgagcctggtgagcatgtgccgtgacccagtgagccctggg
gatctggaggccaagatggagtggaaggtgaagatccgcagcgacggcacgcgctacatc
accaagcggcctgtgagggacaagctgctgaaagagcgtgccctgcgcatccgggaggag
cgcagcggcatgaccacggacgacgatgccatcagcgagctgaagatgggccgctactgg
agcaaggaggagcgcaagcagcacgcggtgcgcgccaaggagcagaggcagcggcgggag
ttcatgaagcagagccgagctgactgtctgaaggatcaggcgagccaggatgacaagaag
gagcccaacatcatcgaactgagccacaaaaagatgaataaaaagaggaacaagaaaata
tttgacaactggatgaccattcaggaactgctgacccacggcactaagtctccagatggc
acgcgagtgtacaactctctgctatcagtgaccacggtttag
DBGET
integrated database retrieval system
