Osmerus eperlanus (European smelt): 134022346
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Entry
134022346 CDS
T10927
Symbol
col17a1b
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
134022346 (col17a1b)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
134022346
NCBI-ProteinID:
XP_062319779
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All DBs
Position
6:14940554..14955754
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AA seq
1627 aa
AA seq
DB search
MDDLISTRHRNHSGGSSGGKETTTSTSRLTSLPPKGTSGSSSHKSMSSNAGGLGLEKNVL
IQNSSESYYTSSSVGVNASGSSLSSGVYNGGDSYGGQREGVWSGGGGGGGGGGGGGGGGG
GGGGGGGGGGGRSGAGGGSGGGGGGGGGGYSLGLSAGGSSGSKVKSSSSAGTRRTHSSAS
TGGLSPVLLDRKNMSSRSGGYDGSSSDNSSPEFKRKDYGSGATRGRSHTRESEIRARLQS
ASPSASRWAELEDVKRLLKGGRSNSVSPTRSSSTSTTLPVPRKAVVETKIRTGASQTVAG
QYEPTTLDSTLPSYSWSSSTLPSSSSTIVPSSGHYGYHSNTNNMSPGSSPLNATSSPSSL
SVYGFQNNLSPTSSTVLSTSGVNTHAGMSAGGYGVQKNGSNSVGLVSTGVSTSTNSRSVA
DDTNRKDFKYLILEKENYPGKRDTEVLLMSKDSGKNFSSTTAVSLSDNSMKKGKMSSSYT
ETTPLKSESGAYYGSPMVSTKDKATYAEIHKEGEYYGGGGGGEGGGCGCDESCCSWWKWL
LALLLLSLLLLGLLFGLIALADEVKKLKSRVAALESESSASSARTSRLSASANDVNTLQS
GSYMDSGGYARADNGLNLGTNLDTGTGTFLGTGTNGQVDNDALQRTIQQMMRAELQSQSF
RALLTSSVRGERGEPGPKGDIGSPGTKGDNGFPGLPGPPGSMGHFGPEGPKGQKGSAGDH
GAEGPSGLRGREGPTGPRGEPGPSGFGEKGDKGSSGEPGPPGSAGQVGLVGPKGSPGASG
SPGTPGQPGPQGFRGESGPSGPKGERGTAGSQGIKGDHGEKGPRGSPGDPGLPGLSGTAG
EKGPKGSAGASGIDGEKGQRGDQGPTGLPGIRGAVGPPGDAGLPGTPGIQGPPGIAGIPG
QPGPKGETGEPGRIVSAVGSNSVAIPGPPGSPGPPGTAGPPGLSGPIGPAGHPGQPGLKG
DRGDRGEQGEAGISVRTTETVSSSRADRQFGSAPIPGPPGPPGPPGSPGDSRSGPPGPRG
PPGEAGYGRPGPRGEKGEPGSFVPNSGTFFAGPPGPPGPAGRTGSQGLPGPRGFQGDAGQ
PGLPGRPGGSDRGESYSTVQGPPGPPGPAGRPGPEGRKGDSGVPGSPGIPGSSRGAASAT
PGPPGLPGPPGIPGIPGTSSSVDMRQYITDYLSRTQGSAVSGPPGPPGPAGVPGSSASIE
DISQHVIAFLHRSGYIGVSGAQSSSGSSGSSGSSRSSGSSGSQLSSSELISLLQREDVRR
YIQGLNGAHGTRTGVADKYNPQEIAEYVYRIVTERGIGGSQPGPPGPPGSSGPPGTPGLP
GTFTGDYSSLLRSSEFRAMVSRSAGPPGQPGSPGLPGPPGPPGSTGRSVSVGSTGYRVED
IQRYLQSSGFSGPPGPPGPPGPQGPPANSRELVPDVSNRNYPREQIRAELQEYLSSDHIR
RSMVGSPGPPGPPGPRGLKGDSYSQGDPRYHQDSERSQADVRRLSETLDYSNVALRVTDY
IRNQGLLQDYLVEGPRRGGIMEVQGPPGPPGPPGAPGYSRVIGSYGNVTADLMDFFRTHG
TIVGPPGRPGSKGDRGYQGPKGEKGDIGHPGLPGLQGFPGYDTSRLETVQTDGVRVGRYR
QRRNVGT
NT seq
4884 nt
NT seq
+upstream
nt +downstream
nt
atggatgatttaatatcaacaagacatagaaaccactcaggaggcagctcaggaggaaag
gaaactacaacctcaacgagtagactgacatctcttccaccgaaaggcactagcggatct
agttctcacaagagtatgtccagcaatgctggaggcttggggttggagaagaatgttttg
attcaaaacagcagtgaaagttattacacttcctcctctgtgggtgtcaatgccagtgga
tccagcctctcctctggggtctacaatggaggagactcctatggagggcaaagagaagga
gtttggagtggaggaggtggaggaggtggaggaggaggaggagggggaggaggtggtgga
ggaggaggagggggaggaggtggaggaggaggaagaagtggagcagggggaggaagtggt
ggtggcggtggcggaggtggtggaggttactcactaggattgtcagctggagggagctca
gggtcaaaggtgaagtcgagctcatcagcgggcaccaggagaacccacagctctgcctcc
acagggggtctctccccagtcctgctggacaggaagaacatgagcagccgctctgggggc
tatgatggaagctcaagtgacaattcctccccagagtttaaacgcaaagactatggttcg
ggagccaccaggggacggagtcacaccagagagagtgagatccgagccaggctgcaaagt
gcttctccatccgcctccagatgggcggagctggaggatgtgaagagactgctgaaggga
gggcgctccaacagtgtcagccccacacgctcctcctccacgtccaccaccctgcctgtc
cccaggaaggctgttgtggagaccaagatacgcactggggcctcccagacagtggcaggt
caatatgagcccaccactctggactccaccctaccatcctactcctggtccagctccacc
cttccctcctcctccagcaccatcgtccccagcagcggccactacggttaccacagcaac
accaacaacatgtccccgggctcctccccgctcaatgccacttcctcgccttcgtctttg
tcagtgtacgggtttcagaacaacctgtctcccacatccagtactgtccttagtaccagt
ggggtcaacacacacgcagggatgtcagcaggtggatatggagtacagaagaatggatca
aacagtgtgggtcttgtgagcactggagtttccacctcaacaaactctaggtcagtagct
gatgatacaaacaggaaagatttcaagtacctgattctggaaaaagagaattatccaggc
aagagggacacagaagttctccttatgtctaaagacagtgggaagaacttcagcagcact
acagcagtttccctctcagacaattctatgaagaaagggaaaatgtcatcgagctacact
gagaccactccactgaagtctgagtctggagcttattatggatcccccatggtgtcaacg
aaagacaaagccacatatgcagagatccataaagagggggagtactatggaggaggagga
ggaggagaaggaggaggctgtggctgtgacgagtcctgctgctcctggtggaagtggctg
ctggctctgctgctgctctccctgctcctcctggggctgctgtttggcctcatcgctctg
gccgacgaagtgaagaagctgaagtctcgtgtggcggccctggagtctgagtcatccgcc
agctctgcccggactagtcgtctgtctgcctctgccaacgacgtcaatacactgcagtct
ggttcttacatggacagcgggggctacgcccgtgccgataacggcctgaacttgggcaca
aacctagacacaggcacgggcaccttcctgggcactggtaccaatgggcaagtagacaat
gatgccctccagaggaccatccagcaaatgatgagggctgaactgcagtcacagtcattc
agagcccttcttacctcgtctgtgagaggagagaggggagagccaggacccaaaggtgat
ataggaagtcctggaactaaaggtgacaatggttttccaggactaccagggcctccaggt
tccatgggtcactttggaccagaaggacccaaaggacagaaaggaagtgcaggggaccat
ggagcagagggaccctcaggactcaggggtcgtgagggaccaacagggcccagaggggag
ccaggtccctcagggtttggagaaaagggggacaaaggttcttctggagaaccggggcct
cctggttctgctggtcaagttggtctggtcggacccaaaggctcacctggagcttctggg
tctcctggcactcctggtcaaccaggccctcaaggcttccgtggggaatcaggaccaagt
ggacctaagggggagagaggcactgctggatctcagggcatcaaaggtgaccatggagag
aaaggacctcgaggttccccaggtgatccagggttaccaggactgtctgggacagctgga
gagaaaggccctaagggttctgcaggagcctcaggaattgacggtgaaaaaggacaacgg
ggtgatcagggtcctactgggttacctgggattcggggtgcagttggacctcctggagat
gctggccttccaggaacccctgggattcaaggaccgccaggaatagcaggaatccctgga
cagcctggacctaagggagaaacaggcgagccaggaagaattgtcagtgcagtgggttct
aactctgtggccatccctgggccccccggcagccctggaccccccggcactgctggccct
cctggcttatcaggccccattggccctgctggtcaccctggtcagcctggtcttaaaggt
gacagaggagacagaggcgaacagggagaggcaggaatctcagtgagaaccacagaaaca
gtgagctcatccagagctgacagacagtttggttctgcaccaatcccagggccaccaggc
cctcctggaccccctggatcccctggagatagcaggtcaggacctcccggtcctcgtggt
cctccaggtgaagcaggatacggtagacctggtccaagaggagagaaaggggagccagga
agctttgtgcccaattcaggaaccttctttgctggacctccaggacctcctggtccagca
gggcgcacagggtcacagggtctacctgggccaagaggattccaaggtgatgctggccag
ccaggtctgccaggaagaccaggaggctctgacagaggagaatcgtacagcacagttcag
ggaccacctggaccccccggtcctgcaggacggccaggaccagagggacggaaaggggat
tctggagtacccggttctcctggtattcctggctcgtctcgaggcgcagcctcagccacc
ccaggacctcctggtcttccgggtcctcctggcatcccaggcatcccagggacctcatcc
tctgttgatatgcggcaatacattaccgactatctaagtaggactcaaggttctgctgtc
tctggcccccccggcccccctggtcctgctggagtgccaggatcttctgcctcaattgaa
gatatctctcaacatgtcatcgccttcctgcaccgttcaggatacattggcgttagcggt
gcccagagctcctctggatcctctggctcctctggctcttctagatcatctggatcttct
ggctctcagctctcatcctcagaactcatttcattactacagagggaagatgtgaggcgg
tatatacaaggtttaaatggggcacatggaacaaggacaggcgtcgcagataagtacaac
ccacaagaaatcgcagaatacgtctacagaattgtgaccgagcgtggtattggtggcagt
cagcctggacctccgggtcctcctggatcttcaggtcctcctgggaccccagggttgcct
ggtacctttactggtgactactcctcactgttgagaagttcagagttccgtgccatggtg
agtcgttcagcgggaccccctggacaacctggttccccaggcctccctggtccccctggc
ccacctggcagcacaggaaggtcagtcagcgtgggctcaactggctacagagtggaggac
atccaacgttatctacagagctccgggttcagtggtcctcctggtcctcctggtcctcct
ggaccccagggacccccagcaaactccagggaacttgtgcctgatgtcagcaacaggaac
tacccacgagagcagattcgggctgaactccaggagtacttgtccagtgatcacatacgg
cgttccatggtgggctccccagggcctcctggccctcctggcccccgcggcctcaaaggg
gacagttactcccagggagaccctcgataccaccaggactctgagcgctcccaggctgac
gtgaggagactcagtgagaccctggactactcaaacgtggccctgagagtcacagactac
atccggaaccaaggcttactgcaggactacctggttgagggcccccgacgaggaggcatt
atggaggtccaaggtccaccaggccctcccggcccccctggggcccctgggtacagccgt
gtcatcggctcctatgggaatgtgacagctgacctcatggacttctttagaacgcatggc
accattgttggccccccaggcaggcctggatcaaagggagacagaggataccaaggtccc
aaaggagagaaaggtgacatcggccacccaggactaccaggactgcaagggttccctggt
tatgacacctccagactagagactgtccagacagatggcgtacgagttggtcgttatcgt
caacgtcggaatgttggaacctaa
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