Osmerus eperlanus (European smelt): 134022364
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Entry
134022364 CDS
T10927
Symbol
prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04120
Ubiquitin mediated proteolysis
oep04137
Mitophagy - animal
oep04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
134022364 (prkn)
04120 Ubiquitin mediated proteolysis
134022364 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
134022364 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oep04131
]
134022364 (prkn)
04121 Ubiquitin system [BR:
oep04121
]
134022364 (prkn)
03029 Mitochondrial biogenesis [BR:
oep03029
]
134022364 (prkn)
Enzymes [BR:
oep01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
134022364 (prkn)
Membrane trafficking [BR:
oep04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
134022364 (prkn)
Aggrephagy
Other aggrephagy associated proteins
134022364 (prkn)
Xenophagy
Other xenophagy associated proteins
134022364 (prkn)
Ubiquitin system [BR:
oep04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
134022364 (prkn)
Mitochondrial biogenesis [BR:
oep03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
134022364 (prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
ubiquitin
IBR
IBR_1
Rcat_RNF216
Rad60-SLD
ADAMTS_CR_3
Dsc3_N
Motif
Other DBs
NCBI-GeneID:
134022364
NCBI-ProteinID:
XP_062319820
LinkDB
All DBs
Position
6:15252779..15291011
Genome browser
AA seq
458 aa
AA seq
DB search
MIVYVRFNSSHGFPLELEEGDSIAKLKETVGRLQGIQGEHLRVIFAGRELRSDSTLQGCD
LPEQSTVHVVFPPPGSARRSELVLQHRLGRGVDSLTRLDLSASRLPTTSTGLAVILETDE
HRARELAEEHAGPQPHSSFYVYCKSVCGAIQPAKLRVRCSVCKQGTLTLSRGPSCWDDVL
LPERIHGVCQSEGCHGRIAEFYLKCATHPTSDDATSVALDLIMPNVRAVPCIACTDVMSP
VLVSQCPDRHVICLDCFHMYCVTRLNERQFIHHPLIGYSLPCAAGCPDSLILEVHHFRVL
GDEQYDRYQRYAAEECLLQMGGVLCPAPGCGAGLLPEEDRRMIQCQLSNGLGCGFVFCRD
CKEEFHEGACRVRSAPVSGVALQGYVLDEEAAARARWEQASQETIEETTRPCPACRVPVE
KNGGCMHMVCPRAQCKFEWCWLCHVEWNRECMGNHWFG
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgattgtgtacgttagatttaactccagtcatggcttcccactggagctggaggaaggg
gacagcatcgccaagctgaaggagaccgtgggccgtctgcagggcatccagggggagcac
ctcagggtcatcttcgccggccgagagctacgcagcgactccaccctccagggatgcgac
ctccctgaacagagcacggttcacgtggtcttcccccccccgggctcggcccggcgctct
gagcttgtcctgcagcaccgcctgggccggggggtggacagcttgacccgtctggacctc
agcgcctcccgcctgccaaccacctccaccggcctggctgtcatactggagacagatgag
cacagggccagagagctggctgaagaacatgcaggaccccagcctcacagcagtttctat
gtgtactgtaagagcgtgtgcggggctatccagcctgcgaagctccgtgtgcgctgcagc
gtctgcaagcagggaactctcacccttagtcggggtccttcctgttgggatgatgtcctg
ttgcctgaacgtatccatggagtctgtcagtcagagggttgccatggcagaatagcggag
ttctatctgaagtgtgccacccaccccacctcagacgacgccacgtcggtggccctggac
ctcatcatgccaaacgtccgggccgttccctgcattgcctgcacggacgtcatgagccca
gtgctggtgtctcagtgtccagaccgtcatgtcatttgtctcgactgctttcacatgtac
tgtgtgacacgcctcaacgagagacagttcatccaccacccactcattggctactctctt
ccatgtgcagctggttgtcctgactctctcattctggaggttcatcatttccgggtcctg
ggtgatgagcagtatgaccgttaccaacgctacgcagctgaggaatgtctgctccagatg
ggcggggtcctgtgccccgcccccggctgtggggccggcctgctgcccgaggaggacagg
aggatgatccagtgtcagcttagcaatggcctgggctgtgggtttgtgttttgtcgcgac
tgcaaggaggagtttcacgagggggcgtgtcgagtgaggtcagctcctgtctcgggtgtg
gccctgcagggctacgtgctggatgaggaggcggcagcgagggcccgttgggagcaggcc
tcccaggagaccatcgaggagaccacccgtccgtgtcctgcctgcagggtccctgtggag
aagaatggtggctgtatgcacatggtgtgtccccgtgcccagtgtaagtttgagtggtgc
tggctgtgtcatgtggagtggaacagggagtgcatgggcaaccactggtttggctga
DBGET
integrated database retrieval system
