Osmerus eperlanus (European smelt): 134023045
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Entry
134023045 CDS
T10927
Symbol
col14a1a
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
oep Osmerus eperlanus (European smelt)
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
oep00535
]
134023045 (col14a1a)
Proteoglycans [BR:
oep00535
]
Extracellular matrix (ECM) proteoglycans
Others
134023045 (col14a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
FN3_Tor_3rd
VWA_3
Motif
Other DBs
NCBI-GeneID:
134023045
NCBI-ProteinID:
XP_062320842
LinkDB
All DBs
Position
7:complement(11600232..11673931)
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AA seq
1866 aa
AA seq
DB search
MWAPLLLLALSSHLPAPALGQVPSPRRIRFKELGTNKLHVSWKEPKGDFDSYIFIYVTKP
GGKQNELRIPKRETKVVITDFDPTKEYTVSVIALSGNQQSKALQGDYTAQDEDPEGEDVQ
PPKMSEPPGLEHVNEISGEPFVCKTAAIADIVILVDGSWSIGRINFRLVRMFLENLVKAF
SVGIDQTRIGLAQYSGDPRIEWNLNAFTTKDAVIDAVKNLPYKGGNTLTGLALTYILENS
FKPEHGSRPGVPKVGILITDGKSQDDVIPPAESLKEAGIELFAIGVKNADENELRSIATE
PDDTHVYNVADFSIMSSIVEGLTMTVCDGVEQQDKEIKNVVPSEEPSGAPSNLVSSEVMA
RSFRVSWSHAPGRVEKYRVVYYTEKTGRPEEAVVEGSESSVVLHHLSALTEYQVAVFAVY
ASSASEPLRGSATTLALTKANGLELYDVTHNSMRARWSKAEGVSGYMILYAALTDDGASG
EKEVRVSEAVSDLELEGLTPDTEYTVSVYAMYGEEASDPINNQQTTLPLTPPRNLQFSDI
NHNSARLTWEAAAREVRGYRIMCVKTDGLVTEEVEVDPVTSWSLNDLNSLTEYSVAIFAI
YDEGQSEPLTDSFTTTPVPGPLNLRASEVTTNSFRVTWGHAATDIALYKLSWAPLNGGDT
KEVVLNGNTASYRLTGLSPFTEYEAMLTAIFQDESESATASVLETTLARTTTVATTTPVV
RLGVRNLKISDETTNSLDASWELEDPLVDQYRVTYTSLRGNRAEEAIVVPGQQRRALLQP
LLSDTKYMVTVTPVYPGGESGVSVSSVGSTLPLSAPSNLRVSDQWYNRFRVTWDAPPSPA
MGYRIVYQPTSVPGSALETFVGEDVNTLLLLNLQTDTEYSIKVIASYTTGSSEPLSAIGK
TLSLGVSGLSTYQVRSTSLCVQWQPHRQASLYRVVIESPINGQKQEVSVGGGASRQCFYD
LSPNSQYQIRIYTQLQDMEGPAIMTSDTTLPAPTQPPTEPPTTPPPATIPAAKEVCKEAK
ADLVFLVDGSWSIGDDNFQKIIRFLYSTMGALDLIGPDGTQVAIAQFSDDARTEFQLNSY
NNKETLLEAIQRIAYKGGNTKTGRAIKHVKEAIFTEVGGSRRGVPKVLVVLTDGRSQDDV
NKVSKEMQTEGHIIFAIGFADADYGELVNIASKPSERHVFFVDDLDAVKKIEEQLITFVC
EAATATCPSVLMSGNTVAGFRMMEKFNLVEKEYSSVAGVSLEPGSFNSFPCYRLHGDALV
SQPTKYLHPEGLPSDYTISMMLRLLPETPQEPFALWEILNKNNEPLVGLLLDNGGKTLTF
FNYDYKGDFQTVTFEGPEIKKIFHGSFHKLHVAISKTSARVVLDCRVVGEKGISAAGNIS
TDGREVLGRMVRSRGAGDSSAPFQLQMFDIICSTSWAGRDKCCELPGLRVEEDCPAMPQA
CTCSQDSKGPPGPSGPPGGPGIRGARGDRGEQGNTGPAGPSGERGPPGPQGPPGPQGPSG
LSIQGPPGGPGEKGEQGDIGAPGHQGVPGSAGSPGRDGPTGQRGLTGKDGPQGQQGPPGP
LGTPGAPGVPGPNGPAGSIGDQGPPGTAGTKGDKGERGDMQSQAAVRSIARQVCEQLIQS
HLSRYNSVLNQIPSQAVSVRTVVGPPGEPGRRGLPGPQGEQGPAGRPGFPGSNGQNGRAG
ERGLSGEKGEKGTPGVGMQGPRGPPGPPGLPGEGRTGSQGPPGRPGNQGTSGRPGTPGST
GPAGAAGYCDQNACLGYNVGVQQLPHGSYQGYNPAGAYNEEEEDEEDGEEEAQDPYRGYR
GYPPQYYQPNYPGPRHPGPAHSGPFNPNPSHSEDTELRSPGMRRFSRDVIGRSSVPDETE
GEEPVN
NT seq
5601 nt
NT seq
+upstream
nt +downstream
nt
atgtgggctccactgcttctcctggctctctcttctcacctccctgcccctgccctgggt
caagttccaagtccacgaagaatacggtttaaagaactgggaacaaacaaattgcatgtc
tcatggaaagaaccgaagggagattttgacagctatatatttatatacgtcaccaaacca
ggtgggaaacagaacgagctgcgcattccaaaaagggagactaaagtggtgataacagat
ttcgatcccacaaaggaatacacggtcagtgtcatcgccttgagtgggaaccagcagagc
aaagctctccagggagactatacagcccaggatgaagacccagagggagaggatgtccag
cccccaaagatgagtgaaccacctggacttgaacatgtcaatgagatctctggagagcca
tttgtgtgcaagacagcggccattgctgacattgtcatcttggtggacggctcatggagt
attggcaggatcaacttcagattggtccgcatgtttctggagaaccttgtcaaagctttc
agtgtgggcatcgaccagaccaggataggtctggcccagtatagtggggacccaaggatt
gagtggaacctgaatgccttcactaccaaggacgctgtgattgatgctgtcaagaacctg
ccatataagggtggaaacactctcacaggcctggcgctgacctatatcttggagaacagc
ttcaagccagagcatggctcccggcccggagttcccaaagttgggatcctgatcacggac
gggaagtcccaggatgacgtcatcccccccgcggagagcctgaaggaggctggcatcgag
ctcttcgccattggcgtgaagaacgccgacgagaacgagctgaggtccatcgccacggag
ccggacgacactcacgtctacaacgtggctgacttcagcatcatgagctccatcgtagaa
ggcctcaccatgacagtgtgcgacggcgtggaacagcaggacaaggagatcaaaaatgtc
gtgccctctgaggagccgtcaggcgcccctagtaacctggtgagctcggaggtcatggcc
cggagttttcgagtctcctggagccacgcccccggccgcgtggagaagtatcgcgtcgtc
tactacaccgagaagacgggtagaccagaggaggcggtggtggaaggcagcgagagctcg
gtggtcttgcatcacctcagcgctctgacagagtaccaggtggctgtgttcgccgtgtat
gctagttccgccagtgagccgctcagaggctcagcaactacattggcccttaccaaggcc
aatggactggagctgtatgatgttacccacaattccatgcgtgcacgctggagcaaagcg
gagggcgtgtccgggtacatgatcctctatgcggcgctgaccgacgacggagcctccggc
gagaaagaggtgagggtgtcagaggcagtgtctgacctggagttggaagggttaactcca
gacacagagtacaccgtgtcggtttacgctatgtacggagaggaagccagcgaccccatc
aacaaccagcagaccaccttgcccctgactccacccaggaacctgcagttctctgacatt
aaccacaactcagccaggctgacctgggaggcggcggcgagggaggtcagaggttaccgc
atcatgtgcgtcaagacagacggactggtgacagaagaggtggaggttgatccagtcact
tcctggtccttgaacgacctgaactctttgacagaatactcggtagccatctttgccatt
tacgatgagggacaatcagaacctctgacagacagcttcacaaccacacctgtgcctggg
cctctgaacctgcgagccagcgaggtcaccaccaacagcttccgggtcacctggggtcac
gctgccacggacattgccctctacaaactgtcctgggcccctctaaacggaggagacacc
aaggaggttgtgttgaatggcaatacagcctcctaccgtctgactggcctgagccccttc
acagaatatgaagctatgctaactgccatcttccaggacgagtctgagagtgccactgcg
tccgtattagagaccacactcgccaggacgacaacggttgctaccacaaccccagttgtg
cgtctgggtgtgaggaacctgaagatcagcgacgaaaccaccaacagcctagatgcatcc
tgggagctggaggacccattggtggaccagtacagggtcacctataccagcctcaggggc
aaccgcgctgaggaggctattgtggttccaggccagcagaggagagccctgctccaaccc
ctgctgtcagacaccaagtacatggtgacagtgacccccgtctacccaggcggagagtcg
ggcgtcagcgtgtcgtccgtgggatccacgttgcccctctcagctcccagcaacctcagg
gtgtccgaccagtggtacaatcgcttccgtgtcacctgggatgctcctccctcccccgcc
atgggctacaggatagtctaccagcccacctcagttccagggtcagctcttgagactttt
gtgggtgaagatgtgaacacattgctgctcctgaacctgcagacggatacagagtacagc
atcaaggtcatcgcttcctacaccaccggctcaagtgaacccctctctgccataggcaag
acattgtctttgggggtgtctggtctgagtacctaccaggtgcgctccaccagtctgtgt
gtccagtggcagccccatcgccaggcgtctctctacagggtggtgattgagtccccaatc
aatggacagaaacaagaagtcagtgttgggggcggagcctccaggcagtgtttctatgac
ctgtctcccaacagccaataccagatcagaatttacacccagctccaggacatggaggga
cctgcgatcatgaccagcgacaccacactccctgctcccacccagccccccacggaaccc
cccaccacgccaccgcctgcaaccatcccggcagctaaagaagtttgcaaggaagccaag
gctgacctggttttcctggtggacgggtcctggagcatcggcgacgacaacttccagaag
atcattcgcttcctctacagcaccatgggagcgctcgatctgattggtccagacggcact
caggtggccattgcccagttcagtgacgacgcaagaacggagttccaactcaactcttac
aacaacaaagagactttgctggaggccatccagaggatagcatacaagggaggaaacaca
aagacaggccgtgccatcaagcacgtgaaggaggccatcttcactgaggtgggggggtcc
aggagaggagtccccaaggtgcttgtggtgctgacggacggacggtcccaggacgacgtc
aacaaggtctccaaggagatgcagaccgagggacacatcatcttcgccattggctttgcg
gacgcggactacggagaactggtgaacatcgccagcaagcccagcgagaggcacgtcttc
tttgtcgacgatctggacgccgtcaaaaagattgaggagcagctcatcacctttgtctgt
gaggccgccaccgcaacttgtccctctgtcctgatgagtggaaacactgtggcaggcttc
aggatgatggagaagttcaacctggttgagaaggagtacagcagtgtggcaggagtgtct
ctggagcctggctccttcaacagcttcccctgctacaggctgcatggcgacgccctcgta
tcccagccgaccaagtacctgcaccctgagggtctgccatccgactacaccatctccatg
atgctccgcctcctccctgaaaccccacaggagccctttgcattgtgggagatcctaaac
aaaaacaacgagccgctcgtgggcctcctcctggacaatggaggaaagactctcacgttc
ttcaactacgactacaagggagacttccagactgtgacattcgagggtcctgagatcaag
aagatcttccacggcagtttccacaagcttcacgtggccatcagcaagacgtcggcccgg
gtggttctggactgcagggtggtgggggagaagggcatcagcgccgctggcaacatcagc
acggacggccgggaggtgttgggacgcatggtccgctccagaggggccggggacagctct
gctccgttccagctccagatgtttgacatcatctgcagcacatcgtgggctggtcgggac
aagtgctgtgaactgccaggcctgcgtgtggaggaggactgccccgccatgccccaagca
tgcacctgctcccaggacagcaaaggccctccaggaccctctggaccccctggaggtccc
ggaatccgaggagcacggggagatcgcggggagcagggcaacacgggacccgctggtcct
tcaggagagaggggtcccccaggccctcagggcccccccggtcctcaggggcccagtgga
ctctcaatacaagggcctccaggtggtccgggggagaagggagagcagggagacatcggt
gctcctggacatcagggtgttccggggtctgcaggctcccctggtcgagacggcccaaca
ggacagaggggtctgacagggaaggatgggccacagggacagcagggccctcctggacct
ttaggaaccccaggggccccgggagtaccggggcccaatggaccagcagggtcaatagga
gaccaggggccaccaggcactgctggtaccaaaggagataagggagaacgaggtgacatg
cagtcacaagctgctgtccgctccatcgcccgccaagtgtgtgagcagctgattcagagc
cacctgtcgcggtacaactctgtcctgaaccagatccccagccaggcagtgtcggtgcgg
acggtggtgggtccgccaggcgagccgggccggagaggcttaccaggaccccagggagag
cagggccctgcaggcagaccgggcttccccggaagcaacggacagaacggccgggcaggg
gagcgaggtctttcaggagagaagggagagaaggggaccccaggagtgggaatgcaaggc
ccccgaggacccccaggacccccagggctccctggtgagggcaggacaggcagccagggc
cctcctggtcggcctggtaaccagggaacctccgggcgacccggcacccctggctccacc
ggtcctgcgggagctgcagggtactgcgaccagaacgcctgtctgggttacaacgtagga
gtccaacaattgcctcacggctcctaccaaggctataaccctgctggtgcttacaatgag
gaagaggaggatgaggaggacggggaggaagaggcgcaggatccgtacagagggtacaga
ggctacccccctcagtactatcagcccaactaccccggtccccgccaccctggccccgcc
cactcaggccccttcaacccaaacccctcccactctgaggacacagagctgaggtcgccg
gggatgagacggttctcccgggatgtgattggacggagcagtgttccagacgagaccgag
ggggaggagccagtaaactga
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