Osmerus eperlanus (European smelt): 134023474
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Entry
134023474 CDS
T10927
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03018
RNA degradation
Brite
Enzymes [BR:
oep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134023474
Messenger RNA biogenesis [BR:
oep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
134023474
mRNA degradation factors
5'-3' decay
Decapping complex
134023474
Chromosome and associated proteins [BR:
oep03036
]
Eukaryotic type
Gene silencing
piRNA pathway
134023474
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134023474
NCBI-ProteinID:
XP_062321614
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Position
7:complement(19630780..19639177)
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AA seq
487 aa
AA seq
DB search
MATARMENPASIMALNKPNGQMRGQAKATGLQSGPLAVAQLPGVPPKGGSITQGSGGIRF
GDDWKKCLQLPPKDTRLRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP
IALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQAMVMVPTRELALQVSQISIQVS
KHLGGVKVMATTGGTNLRDDIMRLDEIVHVVIATPGRILDLIKKGVAKVDKVQMMVMDEA
DKLLSQDFVVLIEDIISFLAKNRQILLYSATFPMSVQKFMAKHLQKPYEINLMEELTLKG
ITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKM
MQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRF
GHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPGSIDKSLYVAEFHSVDPDAELEAGSDR
RRELSAA
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggctacagcaagaatggagaaccctgcatccataatggcactgaacaagccaaacggg
cagatgagaggacaggccaaagcaactggtctacagtcaggacccctggctgttgcccag
ctaccaggtgtccctccgaaaggaggcagcattacccagggtagtgggggcataaggttc
ggtgatgactggaagaagtgcctgcagctccctccaaaagataccagattaagaacctca
gatgtgacatcgaccaaagggaacgagtttgaggactactgcctgaagcgggagctgctt
atggggatctttgagatgggatgggaaaagccctctcctatacaggaggagagcatccct
atagctctgtcaggcagggacatccttgcccgggccaagaatggcacagggaagagcgga
gcctacctcatccccctcctggagaggatagaccttaagaaggaccacatacaagccatg
gtgatggtgcccacaagagagctggccctgcaggtgagccagatcagcatccaagtgagc
aagcacctgggtggggtgaaggtcatggctacgacaggaggcaccaacctgagggacgac
atcatgcgtctggacgagatagttcacgtggtaattgccacaccaggcaggatcctggac
ctgataaagaagggcgtagccaaggtggataaagtccagatgatggtcatggatgaggcg
gacaagctgctgtctcaggactttgtggtcttgatcgaggacatcatcagcttcctagcc
aagaaccggcagattctgctgtactctgccactttccccatgagtgtgcagaagttcatg
gccaaacacctgcagaagccttacgagatcaacctgatggaggagctgactctaaagggc
atcactcagtactatgcgtacgtgactgagaggcagaaggtccactgcctcaacaccctc
ttctccaggctccagatcaaccagtcaatcatcttctgtaactccacccagagggtggag
ctgctggccaagaagatcacccagctgggctactcctgcttctatatccacgccaagatg
atgcaggagtacaggaaccgcgtgttccacgacttcaggaacggactgtgtaggaacctg
gtctgcacagatctgttcaccagaggaatcgacatccaagctgtgaacgtggttatcaac
tttgacttcccgaagaatgcagagacctacctgcatcgcattggcagatctgggaggttt
ggtcaccttggcttggccatcaacctgatcacctcggaggatcgcttcaacctgaagtcc
atcgaggaccagctggtgaccgacatcaagcccatccccggcagcatcgacaagagcctg
tacgtggccgagttccactctgtggacccggacgcggagctggaggcaggcagcgaccga
cgcagggagctcagtgcagcctga
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