Osmerus eperlanus (European smelt): 134023687
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Entry
134023687 CDS
T10927
Symbol
snx27b
Name
(RefSeq) LOW QUALITY PROTEIN: sorting nexin-27b
KO
K17936
sorting nexin-27
Organism
oep Osmerus eperlanus (European smelt)
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oep04131
]
134023687 (snx27b)
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
oep04990
]
134023687 (snx27b)
Membrane trafficking [BR:
oep04131
]
Protein recycling
Others
Others
134023687 (snx27b)
Domain-containing proteins not elsewhere classified [BR:
oep04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
134023687 (snx27b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PX
PDZ
RA
PDZ_6
SNX17-27-31_F1_FERM
RA_2
PDZ_2
USP7_C2
Dickkopf_N
SNX17_FERM_C
Motif
Other DBs
NCBI-GeneID:
134023687
NCBI-ProteinID:
XP_062321972
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Position
7:complement(21781981..21795521)
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AA seq
572 aa
AA seq
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MSDVEGESNRSSVPTCPSTSLNGPSVSSTPGIGGCQTDTTVTSGPRLVRIIKSDAGYGFN
VRGQVSEGGQLRSINGELYAPLQHVSAVLQGGAADSAGISKGDRILEVNGVNVEGATHKQ
VVDLIRAGERQLVLAVLSVAPQEADCMDPGDDGSALSCYDYSDKQAVPISVPTYKHTELN
QEKFVVYHVHMAGRELCSKRYREFSVLHQNLKRDFASYVFPKLPGKWPFSLSEQQLDARR
RGLEEYLEKVCSVRVIGESDIMQEFLSESDENYNGVSDIELRIAMPDKTTVTVRVRKNCT
TDQVYQAVIMKVGMDSVTASYFALFEVINHTFVRKLAPNEFPHKLYVQNYTSAVPGTCLS
LRKWLFSSEEEALFSXHQLAVTYCFYQAVEDVKKGFIKAEDKTYQLQKLAEQKKMAMYLS
MLRGCEGYNEIMFPHCSCDSRRKGNVITAISIQHFKLHACTEEGTLESQVIVFEWGEMQR
WDTDEEGMAFCFQYARGEKKPRWXKIFTPYFNYMHECFERVFCELKWRKEVEEATDKDNR
KCSRDGMCSKNIFQLLRHRKDGDTQEGELITS
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgttgagggagaaagtaatcgttcgtccgtcccgacgtgtccgagcacttct
cttaacggccctagtgtcagctcaacaccgggcattggcggttgccagacagacaccacc
gttacttcgggcccacgactggttcggataatcaagtctgacgctggctatggtttcaat
gtacggggacaagtgagcgaaggtggacaactacggagcataaacggggaattgtatgcc
ccgttacagcacgtcagtgctgttttgcaaggaggtgctgcggacagcgctggtatctcg
aaaggagaccgtattcttgaagtgaacggggtgaacgtggagggggccacccacaagcag
gttgtggacctgatccgtgcgggggagaggcagctggtcctggccgtgctctccgtggcc
ccccaggaggcagactgcatggacccgggggatgacggctcggccctgtcctgctacgac
tactccgacaagcaggcggtgcccatctctgtgcccacctacaaacacaccgagctcaac
caggagaagtttgtggtatatcatgtgcacatggcaggaagggagttgtgctcgaagcgc
tacagggagttctctgttctgcaccagaacctgaagagggactttgcctcctacgtcttc
cccaagctgccggggaagtggcccttctccctgtctgagcagcagctggacgcacggcgc
aggggtctggaggagtacctggagaaagtgtgttctgtgagggtgattggggaaagtgac
attatgcaggagtttttgtcggagtctgatgagaactacaatggagtatctgacatcgag
ctgaggatagccatgcctgataaaaccacagttactgtcagagttcgcaagaactgcacc
actgaccaggtctaccaggctgtcatcatgaaagtaggaatggacagtgtaacagccagt
tactttgctttatttgaggtcatcaaccacacctttgtgcgtaagctggcccctaacgag
ttccctcacaagctgtacgtccagaactacacgtcggcggtgccagggacctgcctcagt
ctgcgcaagtggctgttcagctctgaagaggaggctctgttcagcncacaccagctggcc
gttacatactgcttctaccaggcggtggaggacgtgaagaagggcttcatcaaggcagaa
gacaagacctaccagctgcagaagctggcggaacagaagaagatggccatgtatctgagc
atgttgcgaggctgtgagggctacaatgagatcatgttccctcactgctcttgtgactct
cgccgcaaaggcaacgtcatcacggccatcagcatccagcacttcaaactgcacgcatgc
acagaggagggcacactcgagagccaggtgatagtgtttgagtggggggagatgcagcgc
tgggacacggacgaggagggcatggccttctgcttccagtacgccaggggagagaagaaa
cctcgctggntcaagatcttcaccccctactttaactacatgcacgagtgctttgagagg
gttttctgtgaactcaagtggaggaaagaggtggaggaggctacagacaaggacaacagg
aagtgcagcagagatggtatgtgtagtaagaatatcttccagctgttgagacacagaaag
gatggagacacccaggagggagagctcatcacctcctag
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