Osmerus eperlanus (European smelt): 134023721
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Entry
134023721 CDS
T10927
Symbol
scn8ab
Name
(RefSeq) sodium channel, voltage gated, type VIII, alpha subunit b isoform X1
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
134023721 (scn8ab)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
oep04040
]
134023721 (scn8ab)
Ion channels [BR:
oep04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
134023721 (scn8ab)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
IQ
GPHH
ATP-synt_B
TMEM51
Motif
Other DBs
NCBI-GeneID:
134023721
NCBI-ProteinID:
XP_062322029
LinkDB
All DBs
Position
1:18070370..18108242
Genome browser
AA seq
1842 aa
AA seq
DB search
MIIMCTILTNCIFMTFSDPPEWSKQVEYTFTGIYTFESLTKIVARGFCIDGFTFLRDPWN
WLDFMVISMAYITEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGALVQSVKKLSDVM
ILTVFCLGVFALIGLQLFMGNLRHKCVVWPINNTETTLANGSLGFDWNEYIMNDTNFYFI
PGQIDALLCGNSSDSGRCPEGFTCMKAGRNPNYGYTSFDSFGWAFLTLFRLMTQDFWENL
YMLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQATMEEAEQKEAEFKAM
LEQLKKQQEDAQAAAMATSAGTVSEDPVGEDGEVHLSRSSSEVSKLSSKSAKERRNRKKK
WRQKEQEKEKGDSEKVVKSESDDGSKRSTFRFPGNRLGRKTSINQSLLSIPGSPFMSRHN
SRSSIFSFKGRSKDVGSENEFADDEHSTVEESEDRRGSLFIPYRRNSYSGNSQGSSRINP
LVPHSGGKRNSTVDCNGVVSLIGPGPGGRLLPEVKIDKAATDDSTTEVEVKKKHSGSLMV
SVDQLNSSFKGKDRANSLMSGVTNTLVEELEESQRKCPPCWYKFANIFLIWECFPFWLKI
KHVVNLIVMDPFVDLGITICIVLNTLFMAMEHYPMTPHFEEVLSVGNLVFTGIFAGEMFA
KLVAMDPYYYFQEGWNCFDGFIVTLSLVELGLADVEGLSVLRSFRLLRVFKLAKSWPTLN
MLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKDCVCKINMECELPRWHMNDF
FHSFLIVFRVLCGEWIETMWDCMEVAGQTMCLIVFLMVMVIGNLVVLNLFLALLLSSFSA
DNLAATDDDGEMNNLQIAVIRIKAGIAWFKIHFAVFVATVLKKPIEDEQKPLDDMYDKKL
NCIANHTGVDGNRELDYAKNGNGTTSGIGSSVGKYMIDEDHMSFIHNPNLTVCVPIAVGE
SDFENLNTEDFSSESDVENSKDLDDTSSSEGSTIDIKPDVEEVAVVEVVEEYLDPDACWT
DECVAKYKCCDVPITHGWGKHWWFLRKTCYLIVEHNWFETLIIFMILLSSGALAFEDVYI
EQRKTIKIILEYADRVFTYIFILEMLLKWVAYGFVKYFTNAWCWLDFFIVDVSIVSLIAN
ALGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFS
IMGVNLFAGKYYYCYNETEGALFLPDVVNNKTQCFALINANYTDVRWKNVKINFDNVGAG
YLALLQVATFKGWMDIMYAAIDSRKVEDQPIYEDNIYMYIYFVIFIIFGSFFTLNLFIGV
IIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNKVQGMIFDFVTQQ
VFDISIMMLICLNMVTMMVETDDQTEETENILYWVNFVFIVAFTTEFVLKLFALRHYYFT
IGWNIFDVVVVILSIVGMFLADIIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLF
ALMMSLPALFNIGLLLFLVMFIFSIFGMSNFGYVKHGAGIDDMYNFETFGNSMICLFMIT
TSAGWDGLLLPILNYPPDCNPALENPGTPNTGDCGNPSVGIFFFVMYIIISFLIVVNMYI
AIILENFSVATEESADPLSEDDFETFYEIWEKFDPDASQFINFAKLSDFADTLEHPLRLP
KPNTIELIAMDMPMVSGDRIHCLDILFAFTKRVLGDSGELDMLRQQMEERFVAANPSKVS
YEPITTTLRRKQEDVSAKIIQRAYRSYLARRGFKCKRKPANNKVENGETNQEKKEGTPST
ASLPSYDSVTKPDKEKQDDNNEGKGGRKEKGRNQKDVRESKC
NT seq
5529 nt
NT seq
+upstream
nt +downstream
nt
atgatcattatgtgcaccattttgaccaactgtatattcatgacttttagcgatccacca
gaatggtccaaacaagtagagtataccttcacgggtatttacactttcgagtcacttacg
aagattgttgccaggggcttctgtatagacggattcacctttctaagagatccatggaac
tggttggacttcatggtcatctcgatggcatatataacagagtttgtggaccttgggaat
gtctcggcgttaagaacgttcagggttctccgagcattgaaaactatttctgtcattcca
ggtctgaagaccatcgtcggagctcttgtccagtcggtgaaaaaactgtccgatgtgatg
atcctaaccgtattctgtctcggtgtcttcgctttgattggacttcagctcttcatggga
aacttgcggcacaagtgtgtcgtatggccaataaacaacactgagaccacgttggccaat
ggcagcctaggatttgactggaacgaatacattatgaatgacaccaatttttacttcata
cctggtcagatagatgcccttctctgtggaaatagctcagactcaggacggtgtccagaa
ggcttcacgtgtatgaaggcaggaagaaacccaaactatggctacaccagctttgacagc
ttcggatgggcctttctcacgctcttccgtctcatgacccaggacttctgggagaacctc
tacatgctgacattgagggcggcagggaagacgtacatgatcttcttcgtgctggtgatc
ttcgtgggttctttctacctggtgaacctgatcctggctgtggtggctatggcgtacgag
gagcagaaccaggccaccatggaggaggctgagcagaaggaggccgagttcaaggccatg
cttgagcagcttaaaaaacagcaggaagatgcacaggctgctgccatggcgacctcggct
ggcacggtgtcggaggaccccgtgggggaagatggtgaggttcacctgtcccgtagctcc
tcagaagtctccaagctgagctccaaaagcgccaaggagcgtcgcaaccgcaagaagaag
tggcgtcagaaggagcaggagaaggagaagggtgacagcgagaaggtggtcaagtctgaa
tctgatgacggcagcaagaggagcaccttccgtttcccaggcaaccggctggggagaaag
acgtccataaaccagtctctcctcagcatcccaggctcgcccttcatgtcacgccacaac
agccgcagcagcatcttcagcttcaagggccgctccaaggacgtgggctcggagaacgag
tttgccgacgacgagcacagcacggtggaggagagcgaggaccgccgtggctccctattc
atcccctaccggcgcaacagctacagcggcaacagccagggctcgtcacgcatcaaccca
ctggtgccccactctggagggaagaggaacagcacggtggactgcaacggcgtggtgtcg
ctcatcggcccagggcccggcggacggcttctgcctgaggtgaaaatagataaggcagcc
actgacgacagtaccacagaggtggaggtaaagaagaagcactcaggctctctgatggtg
tctgtggaccagctcaactcctccttcaaggggaaggaccgggccaacagtcttatgagc
ggggtcaccaacactctggtggaggagttggaggagtctcagaggaagtgccctccatgc
tggtacaaatttgctaacatattcctcatctgggagtgctttcccttttggctgaagatc
aagcacgttgtcaaccttatcgtcatggacccctttgttgacttgggcatcactatctgc
atcgtcctcaacactttgttcatggccatggagcactatcccatgaccccccactttgag
gaagtgctgtctgtgggcaatctggtattcactggtatcttcgctggtgagatgtttgca
aagctagttgcaatggacccctactactacttccaggaaggctggaactgctttgacggc
ttcattgtgaccctgagtttagtcgagctgggattggctgacgtagagggactgtctgtg
ctcaggtcattccgattgttacgagtgttcaaattggccaaatcatggcccaccctcaac
atgcttatcaagatcattggcaactctgtgggtgccctggggaacctgaccctggtgctg
gccatcattgtcttcatcttcgctgtggtcggcatgcagctctttggcaaaagctacaaa
gactgtgtgtgtaagatcaacatggagtgcgagctgccacgctggcacatgaacgacttc
tttcactcttttctcattgtgtttcgtgtattatgcggtgaatggatcgagaccatgtgg
gactgcatggaggtggctggacagaccatgtgtctaatcgtcttcctgatggttatggtg
atagggaacttggtggtgttgaacctgttccttgctttgctactgagctctttcagtgcc
gacaatcttgcggcaacagatgacgacggcgaaatgaacaacctccagatcgccgtcata
cgcattaaggcgggaatcgcctggtttaagatacactttgctgtttttgtagccactgtg
ctcaaaaagcccatcgaggacgaacaaaagcccttagatgacatgtacgataaaaaatta
aactgcatcgccaaccacactggcgtggacggcaaccgcgaactggactacgccaagaac
ggtaatggaactaccagcggcatcggtagcagcgtgggcaagtacatgatcgacgaggac
cacatgtcctttatccacaatcccaacctgaccgtgtgtgtccccatcgccgtgggcgag
tccgactttgagaacctcaacacggaggacttcagcagcgagtcggatgtggaaaacagc
aaagacctggatgacaccagctcgtccgagggcagcaccatagacatcaagcctgatgtg
gaggaggtagcggtggtggaggtggtggaagagtacctggatcctgacgcctgctggaca
gatgaatgcgtggctaaatataagtgctgtgatgtgcctatcacacacggctgggggaaa
cattggtggttcctgaggaagacttgctatctgattgtggaacacaactggtttgagact
ctcatcatcttcatgatcctgcttagtagtggcgctttggcctttgaggatgtgtacata
gagcagaggaaaaccatcaaaataatcctggagtatgcagacagagtattcacctatatc
tttatcctggagatgttgctaaaatgggtggcgtacggcttcgtaaagtacttcaccaac
gcctggtgctggctggacttcttcattgtggatgtatctatagtcagccttatagctaat
gcattgggctactccgatctagggcccattaagtcactcaggacactgagggccttgaga
cccctcagggctttgtcccgttttgagggcatgagggtggtggtgaatgccctggtagga
gccatcccctccatcatgaacgtactgctggtgtgtctcatcttctggctcatcttcagc
atcatgggcgtcaacctttttgccggcaaatattattattgctataatgagacggagggg
gctctgttcctcccggatgtggtcaacaacaagacccaatgctttgcgcttattaatgct
aattacacggatgtcagatggaagaatgtcaaaattaactttgacaatgtgggcgctgga
tatttagccctcctgcaagtggccacatttaagggctggatggacattatgtatgcagca
atagattctagaaaggtggaggaccagccaatatatgaggacaacatctacatgtacatc
tactttgttatcttcatcatttttggctctttcttcaccctcaacctcttcattggtgtt
atcattgacaacttcaaccagcaaaaaaagaagtttggaggtcaggatatcttcatgaca
gaggaacaaaaaaaatattataatgctatgaaaaagcttggctcgaagaaaccacagaaa
cccatcccaagaccactgaacaaagtccaggggatgatatttgattttgtaacacagcaa
gtttttgacatctccattatgatgctcatctgcctgaacatggtcaccatgatggtggag
acggacgaccagacggaggagacagagaacatcctctactgggtcaattttgttttcatt
gtagccttcactacagagtttgtgctcaagctctttgctctacgccactactactttact
ataggatggaacatcttcgatgttgtcgtggtaatcctctctatcgtcgggatgttcctg
gctgacatcattgagaagtactttgtttcaccaaccctgttcagggtgatccgcttggcc
cgtattggccgtatcctgcgtctcattaagggtgccaagggcattagaactctgctgttt
gccctcatgatgtcacttcctgccctcttcaacattgggctgttgctcttcctggtcatg
ttcattttctctatcttcggcatgtctaactttggctacgtcaagcatggggctgggatc
gacgacatgtacaattttgaaacattcggcaatagcatgatctgcctgtttatgataacc
acgtcagctggctgggacggcctgctgcttcccatcctcaactaccccccggactgcaac
cccgctctggagaacccaggaacccccaacacgggcgactgtggaaacccctcggtggga
atcttcttctttgtcatgtacatcatcatctccttcctcattgtggtcaacatgtacatc
gccatcatcctggagaacttcagtgtggccactgaggagagcgcagacccgctaagcgag
gacgactttgagaccttctacgaaatctgggagaaatttgaccctgatgcttcccagttc
atcaacttcgccaagctgtccgactttgcagatacactggagcacccactgcgcttgccc
aagcccaacactatagaactgattgccatggacatgcccatggtgagtggcgaccgaatc
cactgcctggacatcctgtttgccttcaccaagcgtgtgttgggcgacagcggcgaactt
gacatgctgaggcagcagatggaggagcgctttgtagcggccaacccctccaaggtgtcc
tacgagccaatcaccacgaccctgaggcgtaaacaggaagacgtgtctgccaagatcatt
cagcgagcgtaccgttcctacctggccaggcggggcttcaaatgcaagcgcaaaccagcc
aataacaaagtggaaaatggcgaaacgaatcaggaaaagaaggaaggcacgccctccacc
gcctccctcccctcttatgacagtgttaccaaacctgacaaggagaagcaggatgacaac
aacgagggcaagggagggaggaaagagaagggcagaaaccaaaaagatgtcagggaatcg
aagtgttag
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