Osmerus eperlanus (European smelt): 134024000
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Entry
134024000 CDS
T10927
Symbol
rorc
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
oep Osmerus eperlanus (European smelt)
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oep03000
]
134024000 (rorc)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
oep03310
]
134024000 (rorc)
Transcription factors [BR:
oep03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
134024000 (rorc)
Nuclear receptors [BR:
oep03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
134024000 (rorc)
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
134024000
NCBI-ProteinID:
XP_062322354
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Position
7:complement(21895502..21913973)
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AA seq
475 aa
AA seq
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MDYEEPESPDPTAVIKREGHLSKKTHLTDIEVIPCKICGDKSSGVHYGVITCEGCKGFFR
RSQLPTVSYSCSRQSNCPIDRASRNRCQHCRLQKCLAQGMSRDAVKFGRMSKRQRDSLNA
EVERHKQLQRLQGEAQTSLAYPSKAHRDQYSPLHPPMALAYHSTGEGEVLPFPTEVHPYL
VCSSGFNSRQASPDQSGLMPRLEMGIRNFDLRDDPFVSYPTSLQQIEELCGSIVRSHRET
SQYRVEELQGLRWKVFSREEIHAYQSKSMDEMWQYCAIRLTDAVQHVVEFAKRIPGFQTL
GQNDQITLLKNGSMEVVLVRMSRLFNTENSTVFFDRKFAGSELFKSLACGDLIKAVFDFA
HSTCALRLTENQIALFSALVLINPERPCLEDRPRVERVRRDVEVGLRHILHRDNQGSLLP
KLNQKVERLRALCSLHVEKLHWFSQCYPLTVHSLFPPLYRELFASDADILPVTTH
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atggattatgaggaacctgaatcacctgatcccacagcagtcatcaaaagagaaggccac
ctgtccaagaagactcatttgactgacattgaagtgatcccgtgtaagatctgtggagat
aagtcttcaggagttcactatggagtcatcacatgtgaaggctgcaaggggttcttccgg
cggagccagcttcccacagtatcctactcctgctccagacagagtaactgtcccatcgac
cgtgccagccggaaccgctgccagcactgccgcctgcagaaatgtctggcgcagggcatg
agccgggatgccgtgaagttcggccgcatgtccaaacggcagcgagactctctgaacgct
gaggtggagcgacacaaacagctgcagcgtctccagggggaggcccagacttccctggcc
taccccagcaaggcccacagggaccagtattctccactacacccgcccatggccctggcc
taccatagcactggggagggagaagtgctacccttccctactgaagtgcacccgtacctg
gtgtgctcctcagggtttaactccaggcaggcctcacctgatcagtcaggactcatgccc
agactggagatggggattcgaaactttgacctacgtgacgatccttttgtctcctatcct
acttctctgcaacaaatagaggagctgtgtggaagcatcgtccgctcccatcgagagacc
agccagtacagggtggaggagctgcaggggctgagatggaaggtgttcagcagagaggag
atccatgcctaccagagcaagtcaatggatgaaatgtggcagtattgtgctatccggcta
actgatgctgttcagcacgtggtggagtttgccaagcggatccccgggttccagacgctg
gggcagaatgaccagatcacccttctaaagaacggttcaatggaggtggtgttagtcagg
atgagccgtctgttcaacacagagaacagcaccgtcttttttgacaggaaatttgcaggg
agtgaactcttcaagtctcttgcctgtggggatctgatcaaggccgtgtttgacttcgct
cacagcacatgtgctctgaggctcacagagaaccagatcgctctcttcagtgcattggtg
ctcatcaacccagagcgtccctgcctggaggacagacccagggtggagagggtgcggaga
gacgtggaggtgggcctccgccacatcctacaccgagacaaccagggcagcctgctgcct
aagttgaaccagaaggtggagcgtctgcgagccctgtgcagtctacatgtggagaagttg
cactggttcagccagtgctacccgctcacggtgcactctctcttccctcctctctacagg
gagctgtttgcctctgacgcagacatcctccctgtaacgacccactga
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