Osmerus eperlanus (European smelt): 134024500
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Entry
134024500 CDS
T10927
Symbol
arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
134024500 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oep03000
]
134024500 (arid1b)
03021 Transcription machinery [BR:
oep03021
]
134024500 (arid1b)
03036 Chromosome and associated proteins [BR:
oep03036
]
134024500 (arid1b)
Transcription factors [BR:
oep03000
]
Eukaryotic type
Helix-turn-helix
ARID
134024500 (arid1b)
Transcription machinery [BR:
oep03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
134024500 (arid1b)
Chromosome and associated proteins [BR:
oep03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
134024500 (arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
134024500
NCBI-ProteinID:
XP_062322937
LinkDB
All DBs
Position
8:complement(7122039..7168389)
Genome browser
AA seq
2538 aa
AA seq
DB search
MAAKVSSALTSNGKKRSNLTSSVSQMKSGKSGGEAKPVVGEGIRTVNIEQHGTHPHELNP
TSLARASTGHRTYPLEKEGEEKSDFFSTSISSMTSSMETGMLGNHKVKNVSGGDPPPPSH
HLTPPQQQSLPFNQFTQHQRQIHNNITNNQPPTQGESGNRQHGGKENILGNQVERHQQLM
NKSEEENQQCKTEDRMDSRYDHASSGPTNNNINNTSQSGNSSVTEFNNYYGNGRGGPCFD
QHGGQQSPGTGIMHSVQNTMDQVQNSHEGYHNSPYNHYQNYRPGYGNSGYGMMSPSRQGN
NIMGPGSNTAVANHSKAAMSAASSPSGNVGGFQRFPGQSQQHPSGATPTLNQLLTSPSPM
MRGYGSGYQDYSNPSAQQQSSMGLAKDIGSQYGSATHGWGGQQRNHPTMSPGNNGQGGSR
SQVQPVDAMAMKRSQLYNMSNNPYSQQQAGPYSGQPYGSPPPHRYPMGMPGRGQMSMGGM
QYPQQQQMAAQYGQQQQQQQGMSGYSQQGQPPYFSPAQQQQQPAAPTQPPYMQPRPPPQQ
EVPQDGYGSRGQSAMTPGKPSHEEMGLSQQERPSSLPDLSGSIDDLPTGTEVAVSSSVSA
SGSTSSQGEQSNPAQSPFSPHVSPRLPGLRSGPSPSPVGSPVGSSQSRSGPISPASVPGS
QMAPQTHGSVSDVGSHSTLSRSPMSQERGFPPALQRNAPGPQFGTQQSGPPMSPHPPPGG
SMHHGSYQQGAPTYGPQSGQYGPPGNYPRPPNYGGAPSASYSGPGPGMGNSLGMNASSPM
HGQGPGQPCGSMPAGRGLGPGPGGRPYPGGTNTMAPTSPSMPQPAGQGMGPPAPNASRKP
HEAGPNAMQAANSAQGRPPYARSPAFHGPSWPGPRPPLSPSPHPSHPHPHPHPQTSPHPH
PQTSPHPHPQTSPHPHPQTSPHPHPQTPPHPHPHPQTSPHPHPQTSPHPHSRPQTSPHLH
PHPQHSPHPHPQPSTHPYSHPQPSPHPHSHPQPSPHPHSHPQPSPHPHSHLQPSPHPHAH
HQSSPLPHPRPQISPHHHLHPQTSPLPHLHPQTSPHPHPKSSPHPHSHPQTSPNPHPHPQ
ASPHPHPHHHPHPQTSLHPHHHPHPQASPQPQSSLHPHHHPHPQASPQPQSSPHPHHHPH
PQASPQPQSSPHPHHHPHPQTSPHPRPQASPPPPPPPPQVSSVLGHPTMLLAEQRGQGSY
PGMSPMGGVGPGAPYSQQPGNNSGRMTPQGSPYNAPPSGPMMMSGDGPGGPPEAKQRVEL
NKEGAAPVAEPPKPKKPSPATMTNEKITRLYEMGGEPERRMWVDRYLAFMEERGTPVPNL
PAVGKKPLDLCRLYLCVREIGGLAMVNKNKKWRELSTHLSVGTSSSSASSLKKQYIQYLF
AYECKVERGEEPPPEILATGDKKNQTHQARIQPPSPANSGSLQGPHTPQSTGSSSMTEMP
VDLKPPTPASTPHSQISLQSSGRNSVGISVQDPFSEGSDPAFHRRGPLPPAASYQQGGGT
AEPSMRMQYDSNKDPYVGPRKVPGGSESYGPGAMPTGAMQDMYPRGPPSGAMPGMGMGPR
PQYPYGPGYDRRPDHVMGPEGGMVPPGGQNNMGPSSNDPSMYPGNRFPHQRPGHEGYGQQ
YPHGPYVSHQPGMYPQQQGYKRAVEGMYGPPAKRHESEAYGMQYGGQQGDVYAQYGGGYM
GPERRPMQGQYPYPYPRERMPPGAQGPPQHGMMSGGPPPSSSGASGEWPRTDMGYPYPGR
QPQGPPYPGMGRGEDPEGRGPPDGQWTNHPGQRQPPYPPHSSTSSSSMPPRQPSSSYQSN
PAMSNHISRAPSPSSYPRPMGGSLSPNSSHYLASMKKVGMPGAMPGSHSGGLPGQAMPPI
HREINYPSGSVEATQPQLKPRRRITSKDTGTPEAWRVMMSLKSGLLAESTWALDTINILL
YDDNTVSSFSLTQMPGFLELVVEYFRRCLMEIFGILEEYEVGTEGQKTLLGPITDALEDM
EEEPPAVQEPDSQSEEEQQRESNSEAGTERPTSNGGTEGAGLEERKEEQQPVVVTVKEEE
MEEGTPTNQAEPVQQQEPPEPRPKQASKYDKLPLKLEEKDKEEDSVEECSAGLSLPRGFT
SGLLHWKAGGGDSTAHIQTHFERRTGGPRLHKPLVREEEAWTHEEGETETEENRDEEEEK
RDDSDSEAASVGKSVSAPADDVPSAGFLSEGKAEPFPCSGGPSRSLLPLLEDEPRCWDEA
PLSVAEPWQDALAKRCVCVSNIVRSLSFVPGNDAEMSRHPGLVLVLGRLVLLHHLHPDRR
RAPPSYQREEEQGRACSKDEWWWDCLSALRENTLVTLANISGQLDLSLYPESICLPILDG
LLHWMVCPSAEAQDPFTTAGGFSSLTPQRLVLECLCKLSIQDANVDLLLATPPFSRQEKL
YATLVRHVGERKSQVCREMAVAVLSNLAQGDPTAARAIALQKGSVGTLIGFLEDSVTMAQ
YQQSPHSLLHPTAPHPEPPSINMMCRAAKALLALAKVEENRPEFVLYESRLLDISLSSVL
NSSVAAIMCEVLFKIGRS
NT seq
7617 nt
NT seq
+upstream
nt +downstream
nt
atggccgcaaaagtgtcatcagccttaacttcaaatggtaagaaaaggtcgaatttaact
agcagcgtcagtcaaatgaaatctggtaaatctggtggagaagctaaaccagtggtggga
gaggggattcgcactgtgaatatagagcaacatggaacgcatccccacgaactaaatcca
accagtttagctcgagcttcgactgggcacagaacgtatccacttgagaaagaaggggaa
gagaaatcagattttttttctacttcgatttccagcatgacttcaagtatggagacggga
atgcttggtaatcataaagtgaaaaatgttagcggcggagatcctcctcctccatctcac
cacctcacacctccacagcaacagtcgctgccattcaatcaattcacccagcatcaacgc
caaattcataacaacattacgaacaaccaaccgccaacacagggagagagtggaaaccgt
caacatggaggaaaagagaatattttagggaatcaagtcgaacgccatcagcagttgatg
aacaaaagtgaagaggagaaccaacagtgcaaaacggaggaccggatggacagcaggtac
gatcatgccagttcgggaccaacgaataacaacatcaacaacacgtctcaaagtgggaac
agctcagttacagagtttaataattattatgggaatggaagaggagggccttgctttgat
caacatggcggacaacaaagccccgggactgggataatgcattcggtacagaacactatg
gatcaagttcagaactcacacgaaggttaccacaatagcccgtataaccactaccagaac
tatcgacctggttacggcaacagtggatacggaatgatgagcccctcgcggcaggggaat
aacataatgggcccgggcagcaatactgctgttgctaatcatagcaaagctgccatgtct
gctgcttcttctccgagtggtaatgtaggaggatttcaaagatttccagggcaaagtcag
cagcatccttcgggggctaccccgactctaaaccagctactgacatctccaagtccgatg
atgcgaggctatggcagtggctatcaagattacagtaatccctctgcacaacaacaatca
agcatggggctggctaaagacataggctctcaatatggttcggctactcatggctgggga
ggacaacaaagaaatcaccctacaatgagccctgggaacaacggacaaggaggcagcagg
tcccaggttcaacccgtggacgcaatggcgatgaagcgctcccaactctacaacatgagc
aacaatccgtactcccagcagcaggcagggccctactctggccagccatatggatcgccc
cctcctcaccgctaccccatgggaatgcctggaaggggtcagatgagcatgggtggaatg
cagtaccctcaacagcagcagatggcagctcagtatgggcagcagcagcagcagcagcag
ggcatgagcgggtacagccagcaggggcagcccccgtacttcagccccgcccagcagcaa
cagcagcccgccgcccccacacagccaccttacatgcagccacgcccacccccacagcag
gaggtgccacaggatggctatggcagcaggggccagtctgctatgacccctgggaagccc
agccatgaggagatgggcctcagccaacaggagagaccatccagcttacctgacctgtcg
ggttccatcgacgacctccccacagggacggaggtggccgtcagctcgtccgtcagcgcc
tcgggctccaccagcagccagggcgagcagagtaaccccgcccagtcgcccttctcgccc
cacgtgtcgccacggctccctgggttacgcagcggcccctccccctccccggtcggctcc
cctgtcggctccagccaatcacgctccggacccatatcacccgctagtgtcccaggcagc
cagatggcgccgcagacccacgggagcgtgtcagacgtgggctcccattccaccctgagc
cggtcgcccatgtcccaggagagagggttcccacctgccctgcagaggaatgccccgggc
ccccagtttggaacccagcagtctggcccccccatgtctcctcaccctcctcctgggggg
tcaatgcaccatggctcctaccagcagggggcccctacctatggccctcagtctgggcag
tacggccccccaggtaactaccccaggccccctaactacggaggggctcccagtgccagc
tacagtgggcctggccctggcatgggcaacagcctaggcatgaacgccagcagccccatg
cacggccagggtcccgggcagccttgcgggtctatgcctgccgggcgaggcctggggccg
gggcccggtggacgcccatacccagggggcaccaacaccatggcccccacctcccccagt
atgccgcagcccgccggtcagggcatgggaccacctgcgcccaacgccagccgcaagccg
cacgaggcgggccccaacgccatgcaggcggccaactctgcccagggaaggcctccctac
gcgcgctcccccgccttccatgggccgtcctggcctgggccgcgccctcctctctctcct
tctcctcacccttcccatccccatcctcacccccatccccagacctcacctcacccccat
ccccaaacctcaccccatcctcacccccaaacctcacctcacccccatccccagacctcc
cctcatcctcacccccaaaccccacctcatcctcacccccatccccagacctcccctcat
cctcacccccaaacctcacctcatcctcactcccgtccccagacttcacctcatcttcac
ccccatccccagcactcccctcatcctcacccccaaccctcaactcatccttactcccac
ccccaaccctcacctcatcctcactcccacccccaaccctcacctcatcctcactcccac
cctcaaccctcacctcatcctcactcccaccttcaaccctcccctcatcctcacgcccat
catcaaagctcacctcttcctcaccctcgtccccaaatctcacctcaccatcaccttcat
ccccaaacctcacctcttcctcatctccatccccaaacttcacctcacccccatcccaaa
agttcacctcaccctcactcccatccccagacatctcctaatcctcaccctcatccccaa
gcctcacctcaccctcatcctcaccatcaccctcatccccaaacctcacttcatcctcac
catcaccctcatccccaagcctcacctcagccccaatcctcacttcatcctcaccatcac
cctcatccccaagcctcacctcagccccaatcctcacctcatcctcaccatcaccctcat
ccccaagcctcacctcagccccaatcctcacctcatcctcaccatcaccctcatccccaa
acctcacctcacccccgtccccaagcctcacctccccctccccctccccccccccaggtc
agcagtgttctgggccatcccaccatgctgctggctgagcagcgcgggcagggaagctac
ccgggtatgtctcccatgggcggggtgggccccggtgccccctacagccagcagccaggg
aacaattctggtaggatgaccccacaaggatccccctacaacgccccaccctcagggccc
atgatgatgtcaggcgacgggccgggaggtcccccagaggccaagcagagggtggagctc
aacaaggaaggggctgctcccgtggccgagcccccaaaacctaagaagcccagccctgcc
accatgaccaatgagaagatcacgcggctgtacgagatgggcggtgagcctgagaggagg
atgtgggtggaccgctacctggccttcatggaggagaggggcacccctgtgccaaacctg
cccgccgtgggcaagaagcccctggacttgtgccgcctctacctgtgtgtgcgggagatt
ggagggttggccatggtcaacaagaacaagaagtggcgcgagctgtccacccacctgagc
gtgggcacgtccagcagctcggccagctctctgaagaagcagtacatccagtacctgttc
gcctacgagtgcaaggtggagcgaggggaggagccccctccagagatcctggccactgga
gacaagaagaaccagacccaccaggccaggatacagccgccctcccccgccaactctggc
tctctgcagggcccccacaccccccagtctacaggaagcagctccatgacagagatgccg
gtggacctgaagccccccaccccggcctccaccccccacagccagataagcctgcagtcc
agcggcaggaacagtgttgggatcagcgttcaggacccgttctcagagggcagtgaccca
gcgttccacaggcgtgggcccctgccccccgccgcctcctaccagcagggaggaggtact
gcagagccctcaatgaggatgcagtacgacagcaacaaggacccctatgtgggccccagg
aaagtaccaggtggcagtgagtcctatggtccaggtgccatgcccaccggtgccatgcaa
gacatgtacccccgtggcccgccctctggagccatgccagggatgggaatgggcccgcgc
ccccagtacccctacgggcccggctacgacaggagaccagaccatgtgatggggccagag
gggggtatggtgccccctgggggtcagaacaacatggggccttccagcaacgaccccagc
atgtatcctggtaacagattccctcaccagaggcctgggcacgagggttatggacagcag
tatcctcacggcccctacgtctcccaccagcccggcatgtaccctcagcagcaggggtac
aagagggcggttgaggggatgtacggtcccccggccaaacgccacgagagcgaggcctac
gggatgcagtacgggggccagcagggcgacgtgtatgcccagtacggggggggctacatg
gggcccgagcgaaggcccatgcagggccagtacccctacccctaccccagggagaggatg
ccacctggggcccagggacccccccagcatggcatgatgagcgggggaccccccccatcc
tcctctggagcctctggagagtggcccaggacagacatgggctacccctaccctggccgg
cagccccaggggcccccgtaccctggcatgggtcggggggaggatccggagggcaggggc
cccccagacggccagtggaccaaccacccgggccagcgccagcccccttacccaccccac
tcctccacctcctcctcctccatgcccccccgacagccctcctcctcgtaccagtccaac
cctgccatgtccaaccacatctccagagcgcccagcccctcctcttacccccggcccatg
ggcggctccctgtcccccaacagcagccactacctggcctccatgaagaaggtagggatg
cccggggccatgccaggctctcacagcggagggctgccaggccaggccatgccacccatc
cacagggagatcaactacccgtctggctccgtggaggccacccagccccagctgaaaccc
agacgcaggatcacctccaaggacacagggaccccggaggcgtggcgtgtgatgatgtcg
ctgaagtcggggctgctggctgagagcacgtgggccctggacaccatcaacatcctgctg
tacgacgacaacacagtgtcctccttcagcctcacacagatgcctggcttcctggagctg
gtggtggagtatttccgccgatgcctgatggagatcttcgggatcctggaggaatacgag
gtaggcacagagggtcagaagacactgctgggaccaatcactgatgccctagaggacatg
gaggaggagcctcctgccgttcaggagccagacagccaatcggaggaggagcagcagaga
gaaagcaattccgaggcggggacagagagacctacgtccaatggaggcacggagggggcg
ggcctggaggagaggaaggaggagcagcagcctgtggtggtcacggtgaaagaggaggag
atggaggaggggacgcccacaaaccaggctgagcccgtccagcaacaagagccccctgag
cccagacccaagcaggccagtaagtacgacaagctgcccctcaagctggaggagaaggac
aaggaggaggactcggtggaggagtgctcggctgggctcagcctgcccaggggcttcacc
agcggcctgctgcactggaaggctggagggggcgactccacggcacacatccagacccac
tttgagagacgcaccggggggcctcgcctccacaagcccctggtgagggaggaggaggcg
tggacccacgaggaaggagagacggagactgaggagaacagagacgaggaggaggagaag
agagacgactcggactccgaggcggcgagcgtcgggaagagcgtgtcggcccccgcggac
gacgtgcccagcgccggcttcctgtcggagggcaaggccgagcccttcccctgcagcggc
gggccgagccggagcctcctccccctgctggaggacgagccgcgctgctgggacgaggcg
ccgctctccgtcgccgagccgtggcaggacgcgctggccaagcgctgcgtctgcgtgtcc
aacatcgtccgcagcctgtccttcgtcccgggcaacgacgccgagatgtcccgccacccg
gggctggtgctggtcctgggacgcctggtcctgctgcaccacctccaccccgacaggaga
cgggcgccccccagctaccagcgggaggaagagcagggccgggcctgcagcaaggacgag
tggtggtgggactgcctgtcggcgctcagggagaacaccctggtcaccctggccaacatc
tcaggccagctggacctgtcgctgtacccagagagcatctgcctgcccatcctggacggc
ctgctgcactggatggtgtgtccctcggccgaggcccaggaccccttcaccacagcgggg
ggcttctcctcgctcaccccccagcggctggtgctggagtgcctgtgcaagctgagcatc
caggacgccaacgtggacctgctgctggccacgccgcccttcagccggcaggagaagctg
tacgccacgctggtgcgccacgtgggcgagaggaaaagccaagtctgccgggagatggcg
gtggccgtcctctccaacctggcgcagggagaccccacagcggcgcgcgccatcgccctg
cagaagggcagcgtgggaacgctgatcggcttcctggaggacagcgtaaccatggcccag
taccagcagagcccccacagcctgctgcacccaaccgccccccaccccgagccccccagc
atcaacatgatgtgccgcgcagccaaggctctgctcgccctggccaaggtggaggagaac
cggcccgagtttgtgctctacgagagccggctgctggacatctccctgtcctcagtgctg
aactcctctgtagcggccatcatgtgtgaagtactgtttaagatcggtcgctcgtga
DBGET
integrated database retrieval system
