Osmerus eperlanus (European smelt): 134024688
Help
Entry
134024688 CDS
T10927
Symbol
hbs1l
Name
(RefSeq) LOW QUALITY PROTEIN: HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134024688 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oep03019
]
134024688 (hbs1l)
Messenger RNA biogenesis [BR:
oep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
134024688 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
134024688
NCBI-ProteinID:
XP_062323276
LinkDB
All DBs
Position
8:complement(11230355..11245845)
Genome browser
AA seq
697 aa
AA seq
DB search
MSRHRNVRGYNYDEDFDDDDMYGQSVDDDYCISPATAAQFIYSRQERAAPNVEPVEEEEC
EDEEMPTSPTITPNLDPLDQGKLYSCLDQMRAVLGDTVPDLVLTQAALGCGFDPQRALDT
VLSGDSGTAPLPQRVPKETPRTNQGTAPVVKTNQEAPTCPHPEKAKSRDGPNKLDCEVVP
KVARMTISGKKQTMGFEVPSVEENGLLIPPGRRGGSPDDVSRPETPSRRPETPSRGSGAG
EEPTTTPGRTPGKARQQLDIKAELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLLGNV
NKRTMHKYEQESKKAGKASFAYAWVLDETGEERDRGVTMDVGMTKFETASKVVTLMDAPG
HKDFIPNMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREHGLLVRSLGVTQLAVAVNK
MDQVSWQQERFQEIVSKLGHFLKQAGFKDSDVFYVPTSGLSGENLTSRCTVSELTSWYSG
PSLLEQIDSFKSPQRSVEKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDRVLAMPPNE
TCTVKGITLHDEPLDWAAAGDHVSLTVTGMDIIKINVGCVFCDPKEPIRACSRFKARVLL
FNIEVPVTKGFPVLLHYQTVSEPATIRKLVSVLHKSSGEVIKKKPKCLGKGMNAIVEIQT
HRPVALELYKDFKELGRFMLRYVGSTIAAGVVTEIKE
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgacatagaaatgtccgaggttataactacgatgaagactttgacgatgacgac
atgtacggccagtctgtggatgatgactactgcatctcaccagctacagcggcccagttc
atctactcccgtcaggagagggcggcccccaacgtggagcccgtagaggaggaggagtgt
gaggatgaggagatgcccacgtcccctaccatcacccccaacctcgaccctctcgaccag
ggcaagctgtactcatgtctggaccagatgcgtgcagtactgggagacacggtaccagac
ttggtcctgacccaggctgccctgggctgtggctttgacccccagagggccctggatacc
gtgctgtctggggacagtgggacggcgcccctcccacagagagtccccaaggagacgcca
agaaccaaccaggggacggcaccagtggtgaagaccaatcaggaagccccaacttgcccc
cacccagagaaagctaaaagcagagatgggcctaataaactagactgtgaggttgtcccc
aaagtggcccgaatgacgatctcaggcaagaaacagaccatgggctttgaagtgccaagc
gtggaggagaacggcctcctcatcccccccgggcggcgcgggggcagcccagacgacgtc
tcccgccccgagaccccctccaggcgccccgagaccccctccaggggctccggagcaggg
gaggagcccaccaccaccccgggccggacgccagggaaggccaggcagcagctcgacatc
aaggccgagctggagaagaggcaggggggcaagcccctcctcaacctggtggttattggc
catgtggacgcggggaagagcaccctgatgggccatctgctgtacctgctggggaacgtc
aacaagcgcaccatgcacaagtacgagcaggagtccaagaaggccggcaaagcctccttc
gcctacgcctgggtcctggatgagaccggcgaggagagggacagaggggtgaccatggac
gtggggatgaccaagttcgagacggcgtctaaagtcgtcaccctgatggacgccccggga
cacaaagacttcatccctaacatgatcactggagctgcacaggcggacgtggccgtgctg
gtggtggacgccagcagaggggagtttgaggcggggttcgaggctggcgggcagacgcgg
gaacacggcctgctggtgcgctccctgggggtcacgcagctcgccgtcgccgtcaacaag
atggaccaggtgagctggcaacaggagagattccaggagatcgtgtccaaactgggccac
ttcctcaagcaggcgggcttcaaggactcggacgtgttctacgtccccaccagtgggctg
tccggggagaacttgacctccaggtgcaccgtgtctgagctcacctcctggtactctggc
cccagtctgctggaacagatcgattccttcaagtctcctcagaggtctgtagagaagccc
ttcagactgtgtgtctctgatgtatttaaagaccaaggttcagggttctgcgtgacaggg
aagattgaggctggctacatccagactggagacagagtcctggccatgcccccaaacgag
acctgcactgttaaaggcatcaccctccacgacgagccccttgactgggccgcggccggg
gatcatgtcagcctcacggtgaccggcatggacatcatcaagatcaatgtgggctgtgtc
ttctgcgaccccaaggagccgattcgagcctgctcccgcttcaaggcccgcgtgctgctc
ttcaacatcgaggtccccgtcaccaagggcttccctgtacttttgcactaccagactgtg
agtgagccagccaccatcaggaagctggtgagtgttctgcacaagagcagtggagaggtg
atcaagaagaaaccaaagtgtttggggaaggggatgaacgctatcgtagagatccagact
caccggcctgtggcgttggagctctataaggacttcaaggagctgggccgcttcatgctg
cgctacgtgggctccaccatagctgcaggggtcgtcaccgagattaaagaatga
DBGET
integrated database retrieval system
