Osmerus eperlanus (European smelt): 134024897
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Entry
134024897 CDS
T10927
Symbol
ptchd4
Name
(RefSeq) patched domain-containing protein 1
KO
K24682
patched domain-containing protein
Organism
oep Osmerus eperlanus (European smelt)
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
oep04990
]
134024897 (ptchd4)
Domain-containing proteins not elsewhere classified [BR:
oep04990
]
Other domain-containing proteins
Patched domain-containing proteins
134024897 (ptchd4)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
NPC1_MLD
Motif
Other DBs
NCBI-GeneID:
134024897
NCBI-ProteinID:
XP_062323625
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All DBs
Position
8:complement(477126..490397)
Genome browser
AA seq
910 aa
AA seq
DB search
MCLIGRDGASASWIWRRMLRQVIHRGLKASFYWLGLFVSRHPVFFLTVPAVLTIIFGSTV
LSRFKPETDLEILVAPTHSLAKIERSLANSLFPIDQSKHKLYSDLHTPGRYGRLILLAKS
GGNILELADQVLQVHKQVLELRVNYKGFNYTFAHLCVLSHRDKRCLLDDIITIFEDIRSA
ILSNSTFSKVPVSYPNTTLKDGRVTFIGHQLGGISFSPGSREQQVKLARAAQISYYLRNH
GPAVQDTIAERWEKEFCALIQRLLGPSEELHLQALTSFSLWRDFHQTGVLAQGEVLVSLV
LVLLSATVSSSMRDCLRGKPFLGLLGVLTICIANVTAAGIFFISDGKFNSTLLGVPFFAM
GHGTKGVFELLAGWRRTRETLPFKERVADAFADVMVCYTMTSSLYIITFGMGASPFTNIE
SVKIFCQSMCVAVLVNYFYVFSFYGSCLVFAGQLEQNRYHSVFCCKIPSVEYLDRQPTWF
KTMMSDGHDLSTHHDSAPYQKHFIQHFLREHYTEWITNTYVKPFVVILYLIYASFSFMGC
LQISDGSNVVNLLASNSPSVSYAMTQQKYFSNYSPVIGFYIYEPIEYWNSTVQEHLRTLG
HGFNKISWIDNYFHYLKVVNVSASTKSDFISILKGSFLQSPEYQHFTEDIIFSKNGEEYD
IIASRMYLVARTTEKTREEVVELLERLRPLSLINSIKFIVFNPTFVFMDRYISSVISPIL
TSSFSVLTILILTIFLVVSPLGNFWLILTVTSVELGVLGLMTLWNVDMDSISILCLIYTL
NFAMDHCAPHLYTFVLANEHTRTQCIKISLEEHGAAILQNASCFVIGMMPLVFVPSNLSY
TLFKCSLLTAGCTVLHCFIILPVFLTFFPPSKKRHKKKKRAKRKEREREREREEVECIEV
RENPDHVTNV
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgtgcctcatcggaagagacggggcatctgcaagctggatctggaggaggatgctgcgg
caagtgatccacagagggctcaaagcttccttctactggctgggcttgttcgttagtcgg
catccggtatttttccttaccgtacccgcagtcctaaccatcattttcggatctaccgtg
ttgagcagattcaagcccgagacggacctcgagatactggttgccccgacgcacagtctc
gctaaaatagagcggagtctcgccaacagcctgttccccattgaccagtctaaacacaag
ctgtattcagacctgcacactccaggcagatacgggaggctgatcctgctggctaagtca
ggggggaacattctggagctagcagaccaggtattgcaggttcacaagcaggtgttggaa
ctgcgtgttaattacaagggattcaattacactttcgctcatctctgcgtcctcagtcat
cgggataagcgatgcctcttggatgatataatcacaatattcgaagacattcgatcggct
atcctctcaaacagcactttctccaaggtgccggtgagctatccaaacacaacattaaag
gacggccgggtgaccttcatcggccaccagctgggaggcatctccttctccccaggcagc
cgggagcagcaggtgaagttagcccgcgccgcccagatatcctactacctccgcaaccat
ggcccagccgtgcaagacaccatcgcagagcgctgggagaaggagttctgcgccctcatc
cagcgtctcttgggccccagtgaggagctgcacctgcaggctctcacctccttcagcctg
tggagagacttccaccagacgggggtgctggcccagggggaggtgctggtgagcctggtg
ctggtgctgctgtctgccactgtctccagctccatgagggactgtctgcgggggaagccc
ttcctgggcctgttgggggtgctcaccatctgcatcgccaacgtcaccgctgcagggatc
ttcttcatctccgacgggaagttcaactccaccttgttgggggtgcccttcttcgctatg
ggccacgggacaaaaggagtgtttgagctgctggcgggctggagacggacgcgggagacc
ctccctttcaaggagcgcgtggctgacgccttcgctgacgtcatggtgtgctacactatg
accagctcgctctacatcatcacctttggcatgggcgccagccccttcaccaacatcgag
tctgtcaagatcttctgccagagcatgtgcgtggctgtcctggtcaactacttctacgtg
ttctccttctacgggtcctgcctggtgtttgcaggccagctggagcagaaccgctaccac
agtgtgttctgctgcaagatcccatctgtggagtacctggaccgccagcccacctggttc
aagaccatgatgagcgacggacacgacctgtccacgcaccacgacagcgccccctaccag
aaacacttcatccagcacttcctgagggagcattacacagagtggatcaccaacacgtac
gtgaagccgttcgtggtgatcctctacctgatatacgcatccttctccttcatggggtgt
ctgcagatcagcgacgggtccaacgtggtcaacctgctggccagtaactctcccagcgtc
tcctacgccatgacgcagcagaaatacttcagcaactacagccctgtgatcggcttctac
atctacgagccgattgagtactggaactccacggtgcaggagcacctgaggacgctggga
cacggcttcaataagatctcctggatcgacaactacttccactacctgaaggtggtgaac
gtgagcgcctcgaccaagagcgacttcatctccatcctcaaaggctcattcctgcagagc
ccggagtaccagcacttcacggaggacatcatcttctccaagaacggtgaggagtacgac
atcattgcgtccaggatgtacctggtggcccggaccacggagaagacgcgcgaggaggtg
gtggagcttctggagagactccgccccctgtcgctcatcaacagcatcaagttcatcgtg
ttcaaccccaccttcgtcttcatggatcgctacatctcctccgtcatctcgcccatcctc
acctctagcttcagcgtcctcaccatcctcatcctcaccatcttcctggtggtcagcccc
ctggggaacttctggctgatcctgacagtgacgtcggtggagctaggcgtgctaggcctg
atgacgctctggaatgtagacatggacagcatctccatcctgtgccttatttatactctc
aactttgccatggatcactgtgcgccccacctgtacacgttcgtcctggccaacgagcac
acccggacgcagtgcatcaagatctcgctggaggagcacggggcggccattttgcaaaac
gcgtcttgtttcgtgatcgggatgatgccgcttgtgtttgtgccttccaacctgagctac
acgctgttcaagtgctccctcctgacggctggctgcaccgtgctgcactgcttcatcatc
ctgcccgtctttctcaccttcttcccgccctccaagaagagacacaagaagaagaagagg
gccaagaggaaggagcgagagcgggagcgggaacgggaggaggtagagtgcattgaagtc
agggagaaccctgatcatgtgacgaacgtctga
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