Osmerus eperlanus (European smelt): 134026307
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Entry
134026307 CDS
T10927
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
oep Osmerus eperlanus (European smelt)
Brite
Transcription machinery [BR:
oep03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
134026307 (scaf8)
Spliceosome [BR:
oep03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
134026307 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134026307
NCBI-ProteinID:
XP_062324921
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All DBs
Position
9:complement(11238768..11259575)
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AA seq
1470 aa
AA seq
DB search
MEAVKAFNGELYSLNEYKPPISKAKMTQITKSAIKAIKFYKHVVQSVEKFVQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSKNIIGTFQNLYRCPSDDKSKIVRVLNLWQKN
AVFKSDLIQPLLDMAAGLPPPTVTPLMSSSSAPVNNTTPGTPATPATPANLVQGLPDWAS
QISNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQHKPQPSLLQALDAGLVVQLQALTAQL
TAAATANTLNPLEQRVSFNKKLLGQFDFGNDSERVEDVKKDTSSSQMPMVSESLNSSIFH
QLAEQLQQQNLEQFQKQLMEHQQHQQKSMSMESQEAMYGMENSATPQSSNQPQLSQSDNK
MDDSVDNQQQDMDMDLDEGPDGMEEDIFETDDKKAASTRSRTRSRSRSRSPKRRRSRSRS
GSRKRKHRKRSRSRSRDRKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLW
VGQVDKKANQQDLTNVFEEFGQIESINMIPPRGCAYICMVHRQDAYRARQKLSTGSCKIG
SKIIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKLDDLDGFAEGGMIDQETVNSEWE
AAKNAEPAKEPPSQVVSVEPLPASNAQTEAYSQQVTMMPVQLPVAQAVPSVGLVPPSFPV
SMAMPPPGYGPPPPFLRAGFNASQPPPGFMQAAGVPQTAGMPSGPTSLVQPSMSASQDGV
KDNPYGAMIPPAGTIPGSYMPSALPGGGVYSPAGLQPQQSANDKTGQSADGMDAQAEITL
QGMQNAVRSGMGLLGMHPSASLTHPLHQSGLASQRMPNLLPMDMRPTLLQGAGARFPLLM
QQGLLDASLQAQARTRAPFSQMDLFNRVSSAPADKAEEEPSSGGDSSQQEGDQDYRFPPP
EKPSTGLLRTPPPEHREPLGSASAGTGGGSGSGGSGGGGRPALLQTPVSQPARNSLVGRL
QALAGFTPDSRWSQTRGDFDERDSIQRGQQAVGSKGFQQEERPSPGQNFPSRFESRAGGT
AVSGAGGAGATGASGSGPAWNRGAPTATATSAPAAPFDPDVHQDLDDRRRPWDRQRDRDD
REFDFRRELNGNRHSRERERERERERDRGRERGTRERDRERERDRDRDKDRERDREREQR
ERGGWMPLLPLPTPLLPTPTLNPNLTLNQTKPLTLLKLQPQTRPPLLPQPLAQTPTPTKT
SPPSLTLSPPPSSVHSAPPAQSQASKPQSETLVQDLAPTPPQVHTTPPQAQSPPQPQSPP
QAQTPPRRETPLQDHVSPQTQAPPQVPSETTSQSPSPPRAQSPFRAQTPPPAHASPHHSP
MSASPPAETTDSPREKDPPQWAREPEKASEEEPQDEPEPHWGNGSAGMDTKIVAEPTPEP
SPESVPEQAPTPTLSPTPTPTMSAAQSPTLEEPPSLAEPPSLAEPADRQQQEEEKERGSS
KDVDSEVGEPLEEAPAEKQPVVEHTDTERT
NT seq
4413 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaaagcatttaacggcgagctgtattcgctcaatgaatacaagcctccc
atctccaaggctaagatgacccagataaccaagtctgcaataaaagctataaaattctac
aagcatgtcgtccagagtgtggagaagttcgtacaaaaatgcaaaccagaatacaaggtc
ccagggctctacgtcatcgactccatagtcaggcagtcacggcaccagtttggccaggag
aaggacgtgttcgccccacgcttcagcaagaacatcatcggaaccttccagaatctctac
cgctgcccgtcagatgacaagagtaagatagttcgggtcctcaacctgtggcagaagaat
gcggtgttcaagagtgacctcatccaacctctgctggacatggctgcaggactgccccct
cccaccgtcacccctctgatgtccagcagctctgcccctgtcaacaacactacccccggt
actccagccacccctgctactcccgccaacctggtccagggcctccctgactgggcctcc
cagatctccaacacagacacagtggctgctgtggcccagatcctccagagccctcagggg
cagcagctccagcagctggtgcagagtctccagatgcagcagcacaagccccagccctcc
ctgctccaggctctggacgctgggctggtggtgcagctgcaggccctgaccgctcagctg
acggccgccgccaccgccaacaccctcaaccccctggagcagagggtgtccttcaacaag
aaacttttgggtcagtttgactttggcaacgattcggaacgagtcgaggatgtgaaaaag
gacacctcctcttctcagatgcccatggtgtccgagtccctcaacagctccatcttccac
cagctggcggagcagcttcagcagcagaacctggagcagttccagaagcagctcatggag
caccagcagcaccagcagaagtccatgagcatggagagccaggaggccatgtacgggatg
gagaactcggccacgccccagagcagcaaccaaccacagctctcccagtccgacaacaag
atggacgactccgtagacaaccagcagcaggacatggacatggacctggacgaggggccc
gatgggatggaggaggacatctttgaaacagacgacaagaaggcggccagcacgcggtca
agaacgcgctcgcgctcacgctccagatctcccaaacggaggcggtccaggtcacgctcg
ggctcgcggaaacgcaagcaccgcaagcggtcgcggtcgcgctccagggaccgcaagagg
aagtcgtcgcgctcctactccagcgagagacgagcgcgggagagggagaaggagcggcag
aagaaggggcttcctcccatccgctccaagaccctcagcgtgtgcagcactactctttgg
gttggccaggtggacaagaaggccaaccagcaggacctcaccaacgtgtttgaggagttt
ggccagatagaatccatcaatatgattcctccccgaggctgtgcctatatctgcatggtc
caccggcaggatgcctaccgggccagacagaagctcagcacaggctcctgtaagattggc
tccaagatcatcaagattgcgtgggctctgaacaagggcgtgaaacaggagtataagcag
ttctgggacgtggacctgggggtcacctacatcccctgggagaaggtcaagctggatgac
ttggacggcttcgcagaagggggcatgatcgaccaggagaccgtcaacagcgagtgggag
gcagccaagaacgcagagcccgccaaggagcctccgagccaggtggtgagtgtggagccc
ctgcctgccagcaacgcccagacagaggcctacagccagcaggtcaccatgatgcctgta
cagctcccggtggcccaggctgtgccctctgtgggtctcgtgcctccatccttccctgtg
tccatggcgatgccgccgccaggctacggccctccaccgcccttcctccgggcagggttc
aacgcctcgcagcctcccccaggcttcatgcaggccgcaggcgtcccacagacagctggc
atgccttccggacctacatccctggtgcagccttcaatgtccgcgagccaggacggcgtc
aaggacaacccctacggagccatgatcccccccgcggggaccatccctggcagctacatg
ccctccgcccttcccggaggaggggtgtacagccccgcaggcctccagccccagcagagc
gctaacgacaagacgggccagtcagccgacggcatggatgcccaggccgagattaccctg
caaggcatgcagaatgcggtacggagtggcatgggtctcttgggcatgcacccctccgcc
tccctcacccaccccctgcaccagtcaggcctggccagccagaggatgcccaacctgctg
cccatggacatgcgtcccaccctgctccagggggctggggcccgcttccctctgctcatg
cagcagggcctgctagatgcctccctccaagcccaggcccgtacccgggcccccttctcc
cagatggacctcttcaacagggtctccagcgccccggcagacaaggctgaggaggagccc
tcctccgggggagacagcagccagcaggagggggatcaggactaccgctttcccccacct
gagaagcccagcacgggcctgctgaggacccctccccccgagcacagggagcccctgggt
agtgctagtgctggtactggtggtggcagtggcagtggaggtagtggaggaggaggcagg
ccagccttgctccagacccctgtcagccagccagccagaaacagcctggtgggccgtctc
caggccttggcaggcttcacaccagacagccgctggagccagaccagaggggactttgac
gagcgggacagcatacagagaggccagcaggccgtggggtccaagggcttccagcaggag
gagcggcccagcccaggacagaacttccccagccgcttcgagagccgtgctgggggaaca
gcggttagcggagcaggcggggctggggctactggggcgagtggaagcggaccagcttgg
aatcgcggggcgcccacggccactgctacctccgctccagcggcgcccttcgaccccgac
gttcaccaagacctggacgaccggcggcgcccttgggaccggcagagggatcgagacgac
agagagttcgacttccggcgagagctgaacggcaaccgccatagccgcgagcgggagaga
gagcgagagcgggagagagatcgaggccgtgagcgcggcaccagggagagagaccgtgag
cgggaaagggaccgagaccgggacaaggacagggagagagaccgcgagagagaacagcgt
gagcgtggaggctggatgcccctgctcccgctgcccacccctctgctgccgacccccacc
ctcaaccccaacctcaccctcaaccaaaccaagcctctgacgctactgaaactgcagccc
cagactagacccccactgttgccccagcctttagctcaaaccccaacaccaaccaagacc
tcacctccatccctgaccctgtctccacccccgtcctcagtccactccgctcctccagcc
cagagccaagcctccaagccccagtcagagacgttggtccaggacctggctccaacgcca
ccccaggtccacaccacacctccccaggctcagtctccgccccagcctcagtcacccccc
caggcccagaccccaccccggagggagacgccactccaagaccatgtgtcccctcagacc
caggctccaccccaggtcccatcagagaccacatcccaatcaccgtccccacccagggcc
cagtccccattccgagcccagacgccacccccagcccacgcttctccccaccactccccc
atgtctgccagcccccccgctgagactacagactcccctagggagaaagaccccccccag
tgggccagggaaccagagaaggcctcagaggaggagccacaggacgaaccagaaccccac
tggggcaatgggagcgctgggatggacactaaaatagtggcagagcccaccccagagcct
tcaccagaatccgtgcctgagcaggcccccacccccaccctctcccccacaccaacccca
acaatgtccgcggcccagtcccccaccctggaggagccccccagcctggcggagcccccc
agcctggcggagcctgcagaccggcagcagcaggaggaggagaaggagcgcggctcctcc
aaggacgtagacagtgaagtgggtgagccgctggaggaagcccctgctgagaaacagcca
gtggtagagcatacagacactgagcggacataa
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