Osmerus eperlanus (European smelt): 134027624
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Entry
134027624 CDS
T10927
Symbol
col2a1b
Name
(RefSeq) LOW QUALITY PROTEIN: collagen, type II, alpha 1b
KO
K19719
collagen type II alpha
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04510
Focal adhesion
oep04512
ECM-receptor interaction
oep04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134027624 (col2a1b)
04518 Integrin signaling
134027624 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134027624 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oep00536
]
134027624 (col2a1b)
Glycosaminoglycan binding proteins [BR:
oep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134027624 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
134027624
NCBI-ProteinID:
XP_062326535
LinkDB
All DBs
Position
1:22656870..22697976
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AA seq
1490 aa
AA seq
DB search
MFSFVDSRTVLLLVATQVVLLAVVKCQEEDDQDAFSCIQDGQKYSDKDVWKPEPCRICVC
DTGSVLCDGIICEELKDCPNPEIPFGECCPICAANQGPPSGSPGAKGQKGEPGDITDVMG
PRGPGGPMGPPGEQGSRGARGDKGEKGGPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFAAQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGASG
PTGPRGPPGPSGKPGDDGEAGKPGKGGERGPAGPQGARGFPGTPGLPGIKGHRGYPGLDG
TKGEGGAVGAKGESGSPGENGAPGPMGPRGLPGERGRPGASGAAGARGNDGLPGPAGPPG
PVGPAGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGING
AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGELGPAG
LQGPLGPAGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPAG
VGGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPMGARG
QPGVMGFPGPKGANGEPGKGGEKGLLGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGAAGATGPRGERGFPGERGGAGPQGLQG
PRGLPGTPGTDGPKGAIGPGGAPGAQGPPGLQGMPGERGASGIPGPKGDRGDNGEKGPEG
ASGKDGSRGLTGPIGPPGPAGPNGEKGESGPAGPSGAAGARGAPGDRGETGPPGPAGFAG
PPGSDGQPGAKGEQGEGGQKGDAGAPGPQGPSGAPGPSGPTGVSGPKGARGAQGPPGANW
FPCAAGRVGPPGPNGNPGPSGPAGPXGKDGPKGVRGMAGPPGRQGDAGLRGAAGTPGEKG
DSGEDGPPGPDGPSGPSGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGSPGGSGDRG
PPGPVGPPGLTGPSGEPGREGNAGSDGPPGRDGATGIKGDRGNTGPAGAPGAPGAPGASG
PVGPTGKQGDRGEAGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGEGGERGQKGHRGFTG
LQGLPGPPGQAGDQGASGPAGPSGARGPPGPIGPGGKDGSNGLPGPIGPPGPRGRSGETG
PSGPPGNSGPPGPPGPPGPGIDMSAFAGLSQLEKSPDPLRYMRADQASSNLRQHDVEVDA
TLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVYCNM
ETGESCVHPKPASIPRKNWWSSKTKERKHIWFGETMNGGFHFSYGDDSLAPNTAAIQMTF
LRLLSTEAAQNLTYHCRNSVAYMDASAGNLKKALLLQGSNDVEIRAEGNSRFTYSVMEDG
CTKHTGQWGKTVIEYKSQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcgaggactgtactgctacttgtagcaacccaagtcgttcta
ttagccgttgtcaaatgtcaagaggaagacgatcaggatgcatttagctgtatacaggac
gggcagaagtacagtgacaaggacgtctggaaaccagagccgtgtcgcatctgtgtgtgt
gacacgggcagcgtcttgtgtgacgggattatctgcgaggaactaaaagactgccctaat
ccagagatcccatttggagagtgttgccccatctgcgctgccaaccagggccctcccagc
ggatcacctggagctaagggccagaaaggtgaacccggagatattactgatgtgatgggg
cctcgcggacctggaggtcctatgggccccccaggagagcagggatcacgcggagcacga
ggagacaaaggcgagaagggaggtcctggcccccgcggcagagatggcgaacctggtacc
cccggaaaccccggcccccctggacctccagggccaaacggaccccctggccttggtgga
aacttcgctgcccagatggctggaggcttcgatgagaagtcaggaggcgctcagatgggc
gtgatgcaaggacctatgggccccatgggtccccgaggaccacctggcccctctggagct
cctggcccacaaggtttccaaggcaaccccggagaggctggagagcccggagcgtctggc
cccacgggacctcgtggacctcctggaccttctggaaaacctggagatgatggtgaggct
ggtaagcctggtaaaggaggagagcgtggccccgcaggcccccagggtgcgcgtggattc
ccaggaacccctggcctgcctggcatcaagggacacagaggctatcctggtctggatgga
accaaaggagagggaggagcagtcggagctaagggagagtctggttcccctggagagaat
ggcgctcccggacccatgggaccacgtggtctgcctggtgagaggggtcgtcccggagcg
tctggagctgctggtgctcgcggaaatgatggtttgcctggccctgctggtccccctggc
cctgttggacctgctggagctccaggcttccctggctctcctggttccaagggagaagct
ggccccaccggagctcgcggccccgagggagcccaggggccccgtggagagtcaggaact
cctggatcacctggaccctctggcgcctctggaaaccctggtactgatggaatcaacgga
gccaaaggatctgctggcgctcctggtatcgctggtgcccctggcttccccggaccccgc
ggcccccccgggcctcagggagccactggacccctgggaccaaagggaacgtcgggtgac
cctggtatcccaggcttcaagggagaggctggacccaagggagagctcgggcctgctgga
cttcaagggcccctgggccctgcaggagaggagggaaagagaggtccccgtggagagcct
ggtgctgccggacccctcggaccccctggagagagaggtgcgcctggtaaccgtggtttc
ccaggacaagatggtctggctggtcccaagggagcccctggcgagcgtggacccgcaggt
gtgggtggtcccaagggagccaacggagacccaggtcgccctggagagcctggtctgcct
ggtgccagaggtctcactggtcgccctggtgatgctggtcctcaaggcaaagttggacct
tctggtgctgctggtgaggatggtcgccctggaccccctggccctatgggagctcgtgga
cagcctggagtcatgggattccctggacccaaaggagccaatggtgagcctggtaaggga
ggagagaagggtctcctgggagctcccggtctgaggggtcttcctggtaaggatggagag
acaggagctgctggacctcctggccccgccggacctgctggagagagaggggagcagggg
cagcctggaccttctggattccagggtctgcctggacctcccggccccccaggtgaggga
ggcaagcccggtgaccagggtgttccaggagagggaggagcagccggtgctactggaccc
agaggtgagcgaggtttcccaggagagagaggaggtgctgggccccagggtctacagggg
cctcgaggtcttcctggaactcctggaactgacggacccaagggagccattgggcctggt
ggggcccccggagcccagggaccccctggtctgcagggcatgcctggagaaagaggagcc
tccggcattcctggaccaaagggtgacagaggtgacaacggtgagaaaggacctgagggt
gcctctggcaaggacggttccagaggtttgactggccccatcggaccccctggtcctgct
gggcccaacggagagaagggagagtcaggacctgccgggccttctggtgctgctggggcc
cgtggagcgcctggtgacagaggagagactggaccacccgggcctgctggttttgctggt
cctcctggttcagatggccagcctggggccaagggagagcagggagagggcggccagaag
ggcgacgctggtgcccccggaccccaaggaccctctggtgctccaggaccttcgggtcca
actggagtttctggacctaaaggcgctcgtggagcccagggacctcctggtgccaactgg
tttccctgtgctgctggcagagtcggacctccaggtcctaatggtaaccccggtccttct
gggcccgctggtcctnccggtaaagatggtcccaagggcgtccgagggatggctggtccc
ccaggccgacagggagacgctgggctgcgtggagccgctggcacccccggagagaaggga
gattctggagaggacggcccccctggtcccgacggcccctcaggaccttctggtctggct
ggacagcgtggtattgttggccttcctggtcaacgtggagaaagaggcttccctggtctt
ccaggaccctctggtgagcctggtaaacagggatctcctggtggtagcggagaccgtgga
ccccctggcccagttggaccccctgggctgactggaccttctggagagcctggcagagag
ggcaatgctggatctgatggtcctcctggcagagatggcgccactggtatcaagggtgac
cgtggtaacacaggccctgctggagcccctggtgcacctggggcccctggagcctccggc
cccgtcggtcccaccggcaagcagggagacagaggagaggcgggagcccaaggaccagct
ggaccagcaggaccagcaggagccagaggaatggctggaccccaaggacctcgcggtgac
aagggagaggctggtgagggtggagagaggggacagaagggacacagaggcttcaccggt
ctgcagggtctccctggacctcccggtcaagctggagaccagggtgcatctggacctgct
ggaccctctggagccagaggaccccctggacctattggacccggtggaaaggacggttcc
aacggtcttcctggacccatcggaccccccggaccccgtggtcgctctggagagaccggt
ccctccggtccccctggtaactctggcccccccggtcctcccgggccccccggcccaggc
atcgacatgtccgccttcgctggcctgtctcagcttgagaagtcccctgaccccctgagg
tacatgcgtgccgaccaggcctccagtaacctgcgccaacacgacgttgaggtggacgcc
accctcaagtctctcaacaaccagatcgagaacatccgcagccccgagggctccaagaag
aaccccgccaggacctgcagagacctgaagctctgccaccccgactggaagagcggagag
tactggatcgaccccaaccagggctgcaccatcgacgccatcaaggtctactgtaacatg
gagactggcgagtcctgcgtccaccccaagcctgccagcatcccacgcaagaactggtgg
tccagcaagaccaaggagcgcaaacacatctggttcggagagaccatgaacggagggttc
cacttcagctacggcgacgacagcctggctcccaacaccgccgctatccagatgaccttc
ctgaggctgctgtccacagaggccgcccagaacctcacctaccactgccgcaacagcgtg
gcctacatggacgcgtccgcgggaaacctgaagaaggctttgctgctgcagggctccaac
gacgtggagatccgagccgagggcaacagccgcttcacctacagcgtcatggaggacgga
tgcacgaaacacacaggacagtggggcaagacagtcatcgagtacaagtcacagaagacc
tctcgtctgcccattgtggacattgcccccatggacatcggtggagcagaccaggagttc
ggagtcgacgttggcgcagtctgtttcttgtaa
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