Osmerus eperlanus (European smelt): 134027856
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Entry
134027856 CDS
T10927
Symbol
neo1a
Name
(RefSeq) neogenin 1a isoform X1
KO
K06766
neogenin
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04350
TGF-beta signaling pathway
oep04514
Cell adhesion molecule (CAM) interaction
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
134027856 (neo1a)
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
134027856 (neo1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
oep04515
]
134027856 (neo1a)
Cell adhesion molecules [BR:
oep04515
]
Immunoglobulin superfamily
DCC/UNC5 family
134027856 (neo1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Neogenin_C
fn3
I-set
Ig_3
ig
Pur_ac_phosph_N
Ig_2
FN3_DSCAM-DSCAML_C
Fn3_VIN3
V-set
Interfer-bind
Tissue_fac
Ig_RIMBP2
fn3_2
V-set_CD47
F5_F8_type_C
EphA2_TM
Ins145_P3_rec
Herpes_UL74
TM_ErbB1
PRIMA1
Motif
Other DBs
NCBI-GeneID:
134027856
NCBI-ProteinID:
XP_062327047
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All DBs
Position
10:complement(9429361..9543935)
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AA seq
1497 aa
AA seq
DB search
MAERGARSLLSLLCLTFFYPATTYTRHADKGVAEPFSPFWFSVEPQDTLAIRGAAALLNC
SAHSEAATPARVEWKKDGTFLSLASDERRRVLPDGSLLISAVVHSKHNKPDEGTYQCMAT
IDNLGTIASRTARLSVAGMPRFASQPAPASVRPGDSQVLACDVNADLAAFVHWERERELL
DLGTRRVQLPSGALVISNASEADSGMYRCVVENAGPAKTSEEAQLLALPETGEERKLEFL
VQPLPVTKSVGENVLLPCVVTGYPAPYVRWMFGDKLVEESEGRLEVVGGGSLQILNLTQE
DAGDYTCMADNTNDTLEAQAGLTVQVPPQFLKRPANIYARESMDIIFECEVTGSPATTVK
WVKNGDAVIPSDYFKIIEEQHLQVLGLVKSDEGFYQCLAENDAGNVQSSAQLIILEHDVA
LPSPLPPSLTPDTTDHVTPGSGGAAAPAGPAPSAPRDVVASLVSTRFIKLTWRPPAEPHG
DELTYSVYYSQEGTSRERILNTSRPGEMQVTIQSLMPDSKYKFRVVAHNRNGLGETSAVL
KVATQAEVQVPGPSPNLQVVSTMPSSTTLSWNTPLTGNGEILTYKLYYMDKASGIEQDVD
IGTLSYTITGLKKYTEYSFRVVAYNKHGPGVSTNDVSVRTLSDVPSAPPQNLTLEVQNSK
SIMVRWQPPPPGTQNGEITGYKIRYRKGSRKSEAAETTRGTQLSQLIEGLERGTEYTFRV
SAITVNGTGPATEWTTAETFESDLDESRVPDIPSSLHVRPLVNSIVVSWTPPENQDIVVR
GYTIGYGIGSPHAQTIKVDYKQRYYSIENLDPSSHYVITLKAFNNVGEGIPVYESAITRP
QSEPIDPDVDLIEFFHPPYTPVPDPTPMLPPVGVQASVLSHDTIKVTWADNSLPKNQKIT
DARYYTVRWKTNIPANTKMKTANTTNLSHMVTGLKPNTLYEFSVMVTKGRRTSTWSMTAQ
GTTFETIPSSSPKDVTVVSKETKPRTIIVNWQPPSEANGKITGYIIYYSTDVNAEVHDWV
IEPVVGNRLTHQIQELTLDTTYYFKIQARNSKGMGPMSEAVHFRTPKTESSDKMANDQAS
NLPIKPGSNQPPPNHGPGSPVGNPGMTGSGDNHILVIVIIISVGAFTIIVVVVGAFLCTR
RTTSHQKKKRAASKSSNGSHKYKGNSKDLKPPDLWIHHERLELKPMDKSPEPNPVMTDTP
IPRTSQDITPAEASLEKPMLQQRRNSYRGHESEDSMSTLSGRRGMRPKMMMPFDAQPPQP
VISAHPIHSLDNHHHHYHTGSLASPTRSYLQHHQSSAHLRPHACATPSSYLDRVDSTESV
RNTPSVEPVITSSQPSCASEHADPDGSYHGSTATDEEPSFASNPPTAHVRPTHPLKSFAV
PAIPAITFESPALPSTPLLAQAGPSSHPHVVKTASIGTLGRTRTPMPVTVPSAPDVPETS
KMLEDVDSVLASLAPCPSPAPRSNPVPLPQSYEPDELTEEMAHLEGLMKDLNAITTT
NT seq
4494 nt
NT seq
+upstream
nt +downstream
nt
atggccgagcggggagcacggtcgctcctctctctcctctgtctcaccttcttctaccct
gcgaccacatatacaagacatgccgacaaaggtgtggcggaacccttcagcccgttctgg
ttctcggtggagccacaggacacgcttgccatccggggcgctgcggcgctgctcaactgc
tccgcccacagcgaggcagccacgccggcgcgtgtggagtggaagaaggacggcaccttc
ttgagcctggcatcggacgagcggcggcgggtgctgcctgacggctcgctgctcatctcg
gcggtggtgcactccaagcacaacaagccagacgagggcacctaccagtgcatggccacc
atcgacaacctggggaccattgccagccgcacggcccgtctctctgtagcaggtatgccc
cgcttcgccagtcagcctgcgccagccagtgtgcgcccgggcgacagccaggtactggcg
tgcgacgtcaatgcagacctggcggccttcgtgcactgggagcgggaacgcgagctgctt
gatctgggcacgcggcgggtccagctgcccagtggggccctggtgataagcaacgcctcc
gaggcagattctggaatgtaccgctgcgtggtggagaatgccggaccagccaagaccagc
gaggaggctcagctcctggcactgccagaaaccggagaggaaagaaagctggagttcctg
gtgcaaccgcttcctgtgaccaaatcagtgggggaaaatgtgctgctgccatgcgtggtg
acaggctacccagctccctatgtccgatggatgtttggcgacaaactggttgaagaaagt
gaggggcgtttggaggtggtgggtggaggcagcctgcagatcctcaacttgacgcaggag
gatgccggagactacacctgcatggccgacaacaccaacgacaccctggaggcccaggcg
gggctcactgtgcaggtccccccccagttcctgaagcggccagccaacatctacgcccgc
gagtccatggacatcatcttcgagtgtgaggtcacaggctcgccagctaccactgtgaag
tgggtgaagaacggagatgccgtcatacccagcgactatttcaaaatcattgaggagcag
cacctgcaggtgctggggctggtcaagtcagacgagggcttctatcagtgcctggcggaa
aacgatgcagggaacgtgcagtccagcgcccagctgatcatcctggaacacgacgtagcc
cttccctcccctcttcccccctcactgactcctgacactactgaccatgtaacgccaggc
tccggaggcgctgccgcccccgccggccccgccccctccgccccccgagacgtcgtggcc
tcgctagtctccacccgcttcatcaagctcacctggcgcccgccggccgagccgcacgga
gacgagctcacctactctgtctactacagccaggagggtaccagcagggagcggatcttg
aacaccagtcgaccaggcgagatgcaagtgaccatccagagcctgatgcctgattccaag
tacaagttcagggtggtagcgcacaacaggaatggtctgggggagacttcagccgtactc
aaggtggccacccaggctgaagttcaagtccctggcccttcccccaacctacaggtcgta
tcaaccatgccctcatccaccacactgagctggaatacgcccctcacgggcaatggagag
atccttacctacaagctgtactacatggacaaggcctctggcatcgagcaggacgttgac
attgggaccctgtcctacaccatcacaggcctgaagaagtacaccgaatacagttttcgg
gtggtggcttacaacaagcatggcccgggagtgtccaccaacgacgtgagcgtccggact
ctgtctgatgttcccagtgctccgcctcagaatctcactctggaggtccagaactcaaag
agcatcatggtccgctggcagcccccaccccctggcacccagaatggggagattaccggc
tacaagatccgttaccggaaaggctccaggaagagcgaagcggctgagaccaccagaggc
acacagctctcccagctcatcgaaggtctggagcgagggacagagtacactttcagagta
tcggccatcacagtgaacggaactggacccgccacagagtggaccacagctgagacgttt
gagagcgacctggatgagtccagggtgccggacatccccagctccctgcatgtgcgtccg
ctggtgaacagcatcgtggtgagctggaccccgccagagaaccaggacattgtggttcgt
ggctacaccatcggctacggtatcggcagcccccatgcacagaccatcaaggtggactac
aagcagcgctactacagcattgagaacttagaccccagctcccactatgtgataaccctg
aaggccttcaacaacgtgggggagggcatccctgtgtacgagagcgctatcaccaggcca
cagtcagaacccatagaccctgacgttgatttgattgaattcttccatcctccatacacg
ccagtaccagaccccacccccatgctgccccccgtcggcgttcaggcctctgtgctgagc
cacgacaccatcaaggtcacctgggctgacaactcactgcccaagaaccagaagatcact
gacgcccgctactacaccgtgcgctggaagaccaacatccctgccaacaccaagatgaag
actgccaacaccaccaacctgagccacatggtaaccgggctgaagcccaacactctgtac
gagttctccgtcatggtgaccaagggcaggaggaccagcacctggagcatgaccgctcag
ggaaccacgtttgagactatacccagctcctcccccaaagatgtgacggtagtgagcaaa
gagactaagccgaggaccatcatcgtaaactggcaaccgccctcggaggccaacggcaaa
atcacgggctacattatctactacagcactgatgtgaacgcagaggtgcacgactgggtg
atcgagccggtggtgggaaaccgtctgacccaccagatccaggagctcacgctggacacc
acctactacttcaagatccaggcacgcaactccaagggcatgggccccatgtcggaggcg
gtgcacttccgcacgcccaagactgaatcctctgacaaaatggctaatgaccaagcctct
aatttgccaataaaaccaggcagcaaccagccacctccaaaccatggtcctggatctcca
gttggtaacccagggatgaccggcagtggggacaaccatatcctggtcatcgtcatcatc
atctctgttggagcgttcaccattatcgtggtggtggtcggggccttcctctgcacacgg
cgcaccacctcacaccagaaaaaaaagcgagcggcatccaagtcgtccaacggctcccac
aagtacaagggcaactccaaggacctgaagccgcctgacttgtggatccaccacgagagg
ctggagctcaaaccaatggacaagtcaccagaacccaacccggtgatgaccgacaccccc
atcccacgcacctcccaggacatcaccccagcagaggccagcctggagaagcccatgctg
cagcagagacgcaactcctaccgtggacacgaatcagaggacagtatgtctacgttgtca
gggcgacgggggatgaggcctaaaatgatgatgccctttgatgcacagccccctcagccc
gtgattagcgctcaccccatccattcccttgataaccatcaccaccattatcacacgggc
agcctggcatccccgacgcgcagctacctccaacaccaccagagcagtgcccacctgcgc
ccgcacgcatgtgccacgcccagctcctatctagacagggtggactccacagagtcagtc
aggaacaccccgagcgtggagccagttattacctcatcacagccatcctgcgcgtccgaa
cacgccgacccggacggcagctaccacggctccactgccaccgatgaggagcctagcttt
gccagcaacccgcccacggcccacgtgcgccccacacacccactcaaaagctttgccgtg
cccgccatccctgccataacctttgagtcgcctgccctgcccagcacaccgctgctcgcc
caggctgggccctcctctcacccccacgtggtgaagacggcctccattggcacactgggt
agaacacgcacgcccatgccagtcacggttcccagtgccccagatgtgccagagaccagc
aagatgttggaggacgttgacagtgtgcttgcctcccttgccccttgcccctcccccgcc
ccccgcagtaaccctgttcctctcccccagagctacgaacccgatgagctgacggaggag
atggcccacctagagggcttgatgaaggacctgaatgccataaccacaacctaa
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