Osmerus eperlanus (European smelt): 134027955
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Entry
134027955 CDS
T10927
Symbol
rbm39a
Name
(RefSeq) RNA-binding protein 39a isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
oep Osmerus eperlanus (European smelt)
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oep03041
]
134027955 (rbm39a)
Spliceosome [BR:
oep03041
]
Common components
Common spliceosomal components
General mRNP proteins
134027955 (rbm39a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_MUD2_C
RRM_occluded
DUF8400
PRP38_assoc
RBD_DEAH11
RRM_5
RRM_7
Ig-CFAP74_2
Motif
Other DBs
NCBI-GeneID:
134027955
NCBI-ProteinID:
XP_062327207
LinkDB
All DBs
Position
1:23588068..23595235
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AA seq
529 aa
AA seq
DB search
MADDFDIEAMLEAPYRKDDIKPSSPNGHEERSKKKKRSRSREKRRSRSGERKKSHDRKRS
RSRERKRSRSKERRRSRSRERGGRYRDHKTSFAGPKFNGGSRGKIGPPAAIKLSRRRSRS
RSPFKKDKSPVRQPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRMISD
RNSRRSKGIAYIEFVEANSVPLAIGLSGQRLLGVPIIVQASQVMAEKNRAAAMANNLQKG
NTGPMRLYVGSLHFNITEEMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFADAECAK
KALEQLNGFELAGRPMKVGHVTERTDASNASSFLDSDELERTGIDLGTTGRLQLMARLAE
GTGLQIPPAAQQALQMSGAIAIGAMAAVSAAMNPGMNMNMNMNMNQGMNTAMNLPSQPLA
THCFQLSNMFNPQNEDTPGWDMDIQHDVIEECNKHGGVVHIYVDKNSTEGNVYVKCPTIP
AAMAAVNALHGRYFAGKMITAAYVPLPTYHNLFPDSVTATQLLIPPPRR
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgattttgacattgaggccatgcttgaggctccataccgcaaggatgacatc
aagcccagtagtcctaacggacacgaggagcggagcaagaagaagaagcgtagccgtagc
cgagagaagaggaggagccggagcggggagaggaagaagagccacgacaggaagaggagt
cgcagccgcgagcgcaagaggagccgcagcaaggagcgccgtcgctcacggagccgggag
cgcggcgggcgctaccgagaccacaagacctccttcgctgggcccaaatttaacggtggt
tccagaggcaagattggccctccagctgccatcaaactaagtcgtaggcgctcaagaagc
agaagccctttcaagaaggacaagagtccagtcaggcagcccatagacaacctgaccccg
gaggagagagatgcacgcaccgtgttctgcatgcagctggccgcccggatacgacccaga
gacctggaggagttcttctctgccgtgggcaaagtgcgagacgtccgcatgatctcagac
aggaactcccggaggtcaaagggcatcgcctacatcgagtttgtggaggccaactctgtc
cccctggccatcggcctgtctggtcagagactgctgggtgtccccatcatcgtccaggcc
tcacaggtaatggcggagaagaacagagccgccgccatggccaacaacctgcagaagggc
aacacggggcctatgaggctgtacgttggctccctgcacttcaacatcacagaggagatg
ctgagggggatcttcgagcctttcggaaggatagagagtatccaactgatgatggacagc
gagacaggccgttctaaaggatatggattcatcacgtttgcggatgccgagtgcgccaag
aaggccctggagcagctcaacggcttcgagctggcgggccggcccatgaaggtgggtcac
gtgacggagcgcaccgacgcctccaacgccagctccttcctggacagcgatgagctggag
cgcaccggcatcgacctgggcaccaccgggcggctgcagctcatggcccgcctggctgag
ggtactggtcttcagatcccccctgctgctcagcaggccctccagatgagtggagccatc
gctataggagccatggctgccgtctcagctgccatgaacccagggatgaacatgaacatg
aatatgaacatgaaccagggcatgaacacggccatgaatctgccctcccagcctctcgcc
acccactgcttccagctgtccaacatgttcaacccacagaatgaggacaccccagggtgg
gatatggacatccagcacgacgtcatcgaggaatgtaacaaacatggtggagttgttcac
atatacgttgacaagaactccactgagggtaacgtgtatgtgaagtgtcccacaattcct
gctgccatggcagccgtcaacgccttacacgggagatactttgctggcaagatgatcacg
gcggcctacgtcccactcccaacctatcacaacctgtttcctgactctgtaacggccact
cagctcctgatcccgccccctcgccgatga
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