Osmerus eperlanus (European smelt): 134028049
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Entry
134028049 CDS
T10927
Name
(RefSeq) nuclear receptor ROR-alpha A-like isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
oep Osmerus eperlanus (European smelt)
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oep03000
]
134028049
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
oep03310
]
134028049
Transcription factors [BR:
oep03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
134028049
Nuclear receptors [BR:
oep03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
134028049
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
134028049
NCBI-ProteinID:
XP_062327349
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Position
10:complement(11168033..11273985)
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AA seq
551 aa
AA seq
DB search
MESPPDPASDPGNSGSEPATPGMDTPVNPNTLRKDEHQPPMRRQSCSSTNKGVSSAKKTH
TSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDRTSRNR
CQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQQQQRDSHSGGPHLHT
SHPHLHSQAPGEAEPLTPPYGLTSSTGLTELHDELGGYMDEQHTPEGSSSLGSSKGDSGG
GGGGGVGGFYLDIQPSPDQSGLDINGIKPEPICDYGSANGFFPYCSFTNGETSPTVSMAE
LEHLSQNISKSHMETCQYLREELQQMTWQAFLQEEMENYQSKSREVMWQLCAIKITEAIQ
YVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFVRMCRAFDSQNNTVYFDGKYAGPDVFK
ALGCDDLISSVFEFAKNMCAMHLSEHEIALFSAFVLMSADRSWLQEKVKVEKLQQEIQLA
LQHVLQKNNREDGILTKLICKVSTLRALCSRHTEKLTAFKATYPDIVRAHFPPLYKELFG
SDFEQAMPLDG
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggagtccccaccggatcctgcaagcgacccgggcaacagcggttctgaaccggctact
cctggaatggacacgccggttaacccgaacacccttcgaaaggacgagcaccagccacct
atgagacgacagagttgttctagcaccaataaaggtgtctcatcagcaaagaagacacat
acatctcaaattgaaataatcccttgcaagatctgtggagataaatcatcagggatccac
tatggcgtgatcacctgcgaaggatgcaagggcttcttcaggaggagtcagcagagtaat
gctgcctactcatgcccgcgccagaagaactgtctcatcgaccgcaccagccgcaaccgc
tgccagcactgccggctgcagaaatgcctagcggtgggcatgtcccgagatgcggtcaag
tttggccgcatgtccaagaagcagcgcgacagcctgtacgccgaagtccagaagcaccgc
ctccaacagcagcagcagcagcagagggacagccacagtggtgggccccacctccacacc
agccacccccacctccacagccaagcgccgggggaggccgagcccctcacccccccctac
ggcctcacgtcctccacgggcctcaccgagctccatgatgagctggggggctacatggac
gagcaacacacccccgaggggagctcttccctgggctcgtccaagggcgactctggcggg
ggcggaggaggaggcgtgggcgggttctacctggacatccagccctccccggaccagtcg
gggctggacatcaacgggatcaagcccgagcccatctgtgattacggctcggccaacggc
ttcttcccttactgctccttcacaaacggagagacttctcctaccgtgtccatggctgag
cttgaacacctgtcccagaacatctccaagtcccacatggagacgtgtcagtacctgaga
gaggagctgcagcagatgacctggcaggccttcctgcaggaggagatggagaactaccag
agcaagtcccgcgaggtcatgtggcagctgtgtgccatcaagatcacggaggccatccag
tacgtggtggagttcgccaagcgcatcgacggcttcatggagctctgccagaacgatcag
attgtgctgctgaaagcaggttcattagaggtggtgtttgtcagaatgtgccgtgccttc
gactcacagaacaacaccgtctactttgacgggaagtacgcagggccagatgtcttcaaa
gcattaggttgtgacgatttgatcagctccgtctttgagtttgccaagaacatgtgcgcg
atgcacctctccgagcacgagatcgccttgttctccgcattcgttttgatgtcggcagat
cggtcatggctccaagagaaagtcaaggtggagaagcttcaacaggagattcaattggca
cttcaacacgtccttcaaaagaacaacagagaagacggtatactcacaaagttaatatgt
aaagtgtccaccttgcgggccctgtgcagccggcacacagagaagctcacagcgttcaag
gcgacgtacccggacattgtgcgagctcacttcccccccttatacaaggagctgttcggc
tcagactttgaacaggccatgcccctggacggctag
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