Osmerus eperlanus (European smelt): 134028114
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Entry
134028114 CDS
T10927
Symbol
katnb1
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
oep Osmerus eperlanus (European smelt)
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
oep04812
]
134028114 (katnb1)
Cytoskeleton proteins [BR:
oep04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
134028114 (katnb1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Katanin_con80
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_DCAF4
ANAPC4_WD40
Beta-prop_EML
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_VPS8
Beta-prop_WDR35_TULP_N
Beta-prop_RIG_1st
PROPPIN
Beta-prop_LRRK2
Beta-prop_IP5PC_F
Beta-prop_IFT122_2nd
Beta-prop_NUP159_NUP214
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
134028114
NCBI-ProteinID:
XP_062327457
LinkDB
All DBs
Position
10:18025108..18034398
Genome browser
AA seq
706 aa
AA seq
DB search
MAVANTTKTSWRLQEIVAHSSNVSSVALGKSSGRLLATGGEDCRVNIWAISKPNCIMSLT
GHNNPVECVQFNSSEEQVVAGSQSGSLRVWDLEAAKILRTLIGHKANICSLDFHPYGEYL
ASGSMDTNIKLWDIRRKGCVFRYKGHTQAVRCLAFSPDGKWLASAGDDCTIKLWDLTAGK
MITEFMAHTGAVNIVQFHPNEYMLASGSSDRTVKLWDLEKFKMIGSSEGETGAVRCISFD
PDGCCLYSGAMDSLRVYGWEPDRCFDLVPVGWGRVADLAICNHQLIGVSFHMTNVSSYVV
DLTRVKKSGSVIQGVIQDNQPLTEPSPKGSTLRRNYERPMTTCNTQRVKQQSSEAQRRSP
EGERQSPSSEDEREEKESSAEIRNADDYKEIFQPKSAISRTPPMRSEPFPAPFEDEIFVV
RPNVTLDTVTPTVDIQQSGQSKPIASSTPVLRVEPTVVSSAPRPIPIQTAMSSVTRPTSS
NPPAPRPAPPAAVTLAKAKPQPSVILSTRNEPIGLNVGDFLPHARNNRPSVLGDDEALSQ
IRKGHDTMCVMLTSRRKNLDTVRAVWGSGDVKTSLDSAMSMNDLSIVVDILNIVNLKPSL
WKLDLCMSILPQIEELLQSKYESYVQTGCMSLKLILKRFWPLISDTLTAPPSVGVDITRE
ERHQKCKACYNQLKNLSNMVKNKADQVGRHGSSFKELQLLMAPLDY
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggccaatactactaagacatcatggagattacaggagattgtggcccactct
agtaatgtgtcgtcggtggctctggggaagagctcgggtcgtctcctggccaccggaggg
gaagactgcagagtcaacatctgggccatcagcaaacccaactgcatcatgagtctgact
ggtcataacaacccagtcgagtgtgtgcagtttaacagctctgaggagcaggtggtggca
ggctcccagtctggatcactgcgtgtctgggacctggaagcagccaagattttaaggacc
ctgataggacacaaggccaatatctgtagcctggacttccatccatatggagaatacctg
gcatctggctcaatggacaccaacatcaagctctgggacattcggagaaagggatgtgtc
ttcaggtacaagggccacactcaggcagtgaggtgtttggctttcagtccagatgggaag
tggctggcctctgctggagatgactgcactatcaagctctgggacttgactgcaggcaag
atgatcactgaattcatggcccacaccggagcggtcaacattgtccagttccacccgaac
gagtacatgttggcgtctggcagctcagacaggactgtcaaattatgggacctggagaag
tttaagatgattggttcttcagaaggagagacaggagcagtcaggtgtatctcgttcgac
ccggatggctgctgcctgtacagtggggcgatggattctctgcgtgtgtatggctgggag
ccagaccgctgttttgacttggtgccagtgggctggggccgtgtggcagaccttgcaata
tgcaaccaccagttgattggcgtgtccttccacatgaccaatgtgtcctcctacgtggtt
gacctaacccgggtaaagaagtccggctctgtgatccaaggtgtgatccaggataatcag
ccactcacagagccctcgcccaaaggatccactctgcgccgcaactatgagagacctatg
acgacatgtaacacacagagggtgaagcagcagagctctgaggcccagcgccgcagccct
gagggcgagagacagagtcccagcagtgaggatgaaagagaggagaaggagtcctctgcc
gagatccgtaatgctgatgactacaaggagatcttccaaccaaaaagtgccatctcccgc
accccccctatgaggagcgagccctttcctgctccttttgaggatgagatctttgtggtg
aggcccaacgtgaccctggacacggtgacccccaccgttgacatacagcagtctggccag
tcgaagcccatagcctcctcgactcctgtcttgagggtggagcctactgttgtttcctct
gctcctcggcccataccgatccagacggcaatgtcctccgtgacacggcccacctcttcc
aacccccccgcaccccgcccagccccaccagcagctgtcaccttggctaaagccaaaccg
cagcctagtgtcatcttatcgaccaggaatgagccaataggactcaacgtgggagatttt
cttcctcatgctcgtaataaccggcccagcgtgctgggggatgatgaggcgttgtcccag
atcaggaagggccatgacaccatgtgtgtgatgctgaccagccggcgcaaaaacctggac
acagtcagggctgtgtggggcagcggcgacgtcaagacgtctctggactcggccatgtct
atgaacgatctctccatcgtggtggacatccttaacatagtcaacctcaaaccgtcgcta
tggaaactggacctgtgtatgtccatcctgccccagattgaggagctgttacagagcaag
tatgaaagttatgtgcagacgggctgtatgtctctgaagctgatcctgaagcgtttctgg
cccctcatctcagacactctcacagcgcccccttctgtcggagtggacatcacacgagag
gaacgacatcagaagtgcaaggcatgttacaatcagctgaagaatcttagcaacatggtc
aaaaacaaggctgaccaggtgggccgccacggcagctccttcaaagagctacagttgctc
atggcccctttggactattga
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