Osmerus eperlanus (European smelt): 134028700
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Entry
134028700 CDS
T10927
Symbol
exosc5
Name
(RefSeq) exosome complex component RRP46 isoform X1
KO
K12590
exosome complex component RRP46
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134028700 (exosc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oep03019
]
134028700 (exosc5)
Messenger RNA biogenesis [BR:
oep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
134028700 (exosc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
134028700
NCBI-ProteinID:
XP_062328412
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All DBs
Position
11:complement(15282132..15286008)
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AA seq
219 aa
AA seq
DB search
MEGCTIPCLMLREFGCEQSLLSRPDGSSSFVQGDSSVLAGVYGPAEVKISKEIYDRATLE
VVIRPKVGLPSVMERAREQCVRETCEASLLSTLHPRSSLTLVLQVVHDDGSLLSCFLNAA
CMALMDAGLPMSCLFCGVTCAIDTEGQIITDPTSAQEKESRALLTFAIDSTEHRVMMSST
KGSFSVHELQQCIAASQKTSEKIFQFYRDSVRQRYSKTI
NT seq
660 nt
NT seq
+upstream
nt +downstream
nt
atggagggttgtacaattccgtgtctcatgcttagggaatttggctgcgaacaaagttta
ttatcgcgaccggatggctcttcctcgtttgtccaaggggattctagtgtgttagcaggg
gtgtacggaccagcagaggtgaaaatcagcaaggagatctacgacagagcaactttggag
gtagtaatacgacccaaagtaggactaccaagtgtaatggagcgagcacgagagcagtgt
gtgcgagaaacttgtgaggcatctttactctcgactcttcatcctcgttcctctctcaca
ctcgtccttcaagtcgttcacgatgatggctcgctgttgtcatgcttcttgaatgctgcc
tgcatggccctgatggatgcaggactgccaatgagctgccttttttgtggagtgacctgt
gctatcgacacagagggtcagatcattactgaccccacatcagctcaggagaaggaaagt
cgagctttgttgacatttgctattgacagcacagagcacagagtgatgatgtcatcaacc
aagggatctttttcagtccatgagcttcagcagtgcatagcagccagccagaaaacctca
gagaagatcttccagttctacagagattctgtcaggcaacgatattccaaaaccatttaa
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