Osmerus eperlanus (European smelt): 134028994
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Entry
134028994 CDS
T10927
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04510
Focal adhesion
oep04512
ECM-receptor interaction
oep04820
Cytoskeleton in muscle cells
Brite
Exosome [BR:
oep04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
134028994 (col4a4)
Glycosaminoglycan binding proteins [BR:
oep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134028994 (col4a4)
BRITE hierarchy
Other DBs
NCBI-GeneID:
134028994
NCBI-ProteinID:
XP_062328925
LinkDB
All DBs
Position
11
AA seq
1702 aa
AA seq
DB search
MCSHPRRGQETGVSVLDVEQSEAKDLKQETPRVAQMTFSICWTTCCSRHLGWLVFMLVAG
QTVFGGDILEECGGRDCTTCQCFPAKGARGPPGAPGNQGPEGNPGSYGPQGPPGEPGHRG
EEGFHGVSGPKGDEGITGPPGYPGLDGIPGYPGPGGIPGLPGLDGCKGAMGDAGFPGIPG
LNGPIGAVGFPGIKGTQGSSAVQFIQYPGIPGDPGPPGVSGLPGEQGRPGLRGSIGPIGY
DGEDGFIGAPGLRGSPGEKGRSLPGQKGDEGDQGTQGPPGPFEFVDPPEDFYIKGSQGDQ
GMKGECGPRGMNGLDSSLGIKGEMGIVGFPGVRGFPGFPGLPGLPGIKGLFGSRGLPGLI
GNEGPKGFAGEPGLKGSTGFQYINDTGPMGGLGLPGQPGLPGDVGEMGMHGPPGYLGISI
PGPDGKPGGRGVPGETGSRGEPGRFYSDGPSAGEPGKQGLLGAKGQKGQRGFPGLYCTAG
EPGEPGQDGVQGPPGGRGFPGYKGSAGACDCGPSIPLVGEPGSIGPPGLPGLPGISGPTG
LRGDSGFSGEPGERGPAGLPGFPGARGFKGPKGDLYIMDIKGKKGAMGSRGPPGQQGATG
MRGQDGFPGTPGDEGPKGDSFSGFPGERGFRGLDGPKGFPGAAGSPGLDVIGAVGLRGPP
GDAGPPGFRGPVGPKGVQGDTLPCVPSNPGAPGEKGDAGQQGLAGGTGPPGYRGLPGPDG
VKGQKGDLGQAGPTGIKGSVGCEGDVGDPGKEGLSYDGSPGSPGLRGPTGLKGPVGDSVP
GAPGPIGFTGPLGLSGPKGVPGPPGPTGLTGEAGLPGYLGTKGERGESGATGRTGSPGPS
PLCESGAKGIAGPPGPAGDQGPPGCAGVKGDVGPEGLPGTGPKGMVGKNGSPGFPGYPGA
QGPTGPIGDSGVPGADGQKGQRGAPGREGSSGDPGRNGALGPPGRKGERGFDGQPGFPGD
EGVKGGKGSKGAFGNPGNTNLIPIKGSPGPPGAPGLDGFTGQRGSKGVMGRQGEPGYAGV
GGPPGVEAGPRGPSGSCGQQGDTGLPGFTGQRGITGFPGEPGDQGDPGLTGPSGTPGFPG
YTGIKGDRGDSIGAPPGPPGDRGPRGEDGIPASSGEKGDQGEPGFSGAPGPKGLPGPPGS
IGPPGPPGVFGPPGPGGRPGAEGPQGNPGVPGLEGEQGPQGLKGPPGPLGLHGLDGLKGV
KGDVGTRGPGVPGPPGYVGPKGDKGSRGCQGPQGPIQSGPLGPKGQSGFTGSPGPMGATG
QPGVDCTNPIPGHCGEAGFPGRDGNPGPPGDIGLPGRALPRTGDEGDNGAPGFPGLKGEK
GSLGVYGLPGIAGLPGFKGELGSPGLMGIPGYRGPSGTCGPPGCKGAQGQKGDPGPKGEV
GSVMFQDNTSAPPGPPGAPGIPGQEGFPGAPGVNGRDGPKGRNGPLGSPGFPGPDGPPGP
GGAPGDRGAQGDRGVLGLQGEQGPTGDPGSPGPSTVFNAGFLLVMHSQSETLPSCPADMA
ELWTGYSLLYLEGQEKAHTQDLGQAGSCMRLFSTMPFSYCNMGTCDYASRNDKSYWLSTT
AAVPMMPVAGTEIKEHISRCVVCEVTSPAVAIHSQDTSTPQCPPKWRSLWMGYSFLMHTG
AGDEGGGQSLTSSGSCLRDFRAQPFVECQGPRGTCHYFANVYSFWLTRVDRSGQFSSSSQ
ATLKDERQQRLNVGRCNVCMKE
NT seq
5109 nt
NT seq
+upstream
nt +downstream
nt
atgtgttcgcatcctaggagaggacaagagacaggggtctcagtcttggatgtggaacag
tcagaggccaaggacttgaaacaggaaacgccccgagtggcgcaaatgacattctctatc
tgctggaccacctgttgcagccgccatctggggtggcttgtgttcatgttggtggcggga
cagaccgtatttgggggcgacatattggaagaatgtggtggacgggactgcaccacatgc
cagtgtttccctgccaaaggagcacggggtcccccaggtgctccaggtaatcagggcccg
gaggggaacccaggatcctatggccctcaggggccaccaggagaacctggacatcgtggg
gaggaggggttccatggggtgtccggtccgaaaggagatgagggtatcactgggcctcca
ggatatcccggattagatggtattcctggctatcctgggccaggaggtatcccaggcctt
ccagggctggatgggtgtaaaggggctatgggggacgctgggttcccaggcatccctggc
cttaacgggcctattggagctgtgggttttccaggaattaaaggaacacaaggaagctct
gctgttcagttcatccagtaccctggcatacctggtgaccctgggcctccaggagtgtct
ggcctgcctggtgaacaaggccgtccaggtctaagaggttctattgggccaattggttat
gatggggaagatggtttcattggtgcacctgggctaagggggtccccaggagagaaagga
agatcgttaccaggacaaaagggagatgagggagaccaaggaacacaggggcccccgggg
ccatttgaatttgtggatcctccagaagatttctacatcaaaggaagccagggggaccaa
ggtatgaagggggagtgtgggcccagaggaatgaatggacttgattcttccctaggaatt
aaaggagaaatgggaattgttggatttcccggagtcaggggctttcctggattccctggt
ctacctggcttacctggaataaaggggcttttcgggagccgtggactacctggtctgatt
ggaaatgaaggaccgaagggctttgcaggggaaccaggcctcaaaggaagcactgggttc
cagtacatcaatgatacaggacctatgggagggctggggttaccaggacaacctggtctc
ccaggagatgttggggagatggggatgcatggtcccccaggatatctaggaatatccatc
ccaggtcctgatgggaaacctggtggacgtggagttcctggggaaacaggttctcgggga
gaacctgggaggttttattctgatggtccttcagcgggcgagcctggtaaacagggcctt
ctaggagctaaaggacaaaaaggacagaggggcttcccaggtttgtactgcacagcagga
gagccaggggaaccagggcaagatggagtccaaggtccaccagggggtagagggttccca
ggttacaaaggtagtgctggtgcctgtgactgtgggccttcaataccactggtgggggag
cctggttctatcggacccccagggttgcctgggttacctggcatctcagggccaactgga
ctgagaggcgacagcggtttttcaggagaacccggagaacgtggaccagccggactgcca
gggtttccaggggctcgagggttcaaaggtccgaaaggggacctctacataatggatatc
aaaggaaagaagggagcaatgggctcccgagggccccctggtcaacagggagccacagga
atgaggggacaagatggtttcccaggtacacctggcgatgaaggcccaaagggggatagc
ttttcagggtttcctggtgagagaggttttcgaggattggatgggcctaaagggttcccc
ggagccgctggttccccaggtttggatgtcataggtgctgtgggactcagggggccccca
ggggatgcgggacccccaggattcagggggcctgttggccccaaaggagtccaaggagat
actctgccctgtgtgcccagtaatcccggagcacctggagagaagggagatgctggacaa
caaggactcgctggtgggacaggtccccctgggtacagaggacttcctggacctgacggc
gtaaagggacagaaaggagacttagggcaggcaggaccaactggaatcaaaggctctgtg
gggtgtgaaggagacgtaggagatccaggcaaagaaggcctgagctatgatggttctcct
gggtcccctggcctaaggggccctacggggctcaagggcccagttggagactcagtccct
ggagctccaggaccaataggattcactggaccactgggcctatcaggacctaagggagtt
ccagggccacctggtccaactggattaacaggtgaagcaggtttgccaggttacctgggg
actaaaggggagcgtggagagagtggtgctacaggcagaactggatctcctggaccctcc
cccttgtgtgaaagcggggccaaaggcatcgcagggccccctggaccagcaggggatcaa
ggccctccaggttgcgctggtgtgaaaggtgatgtcggaccagaaggtttgcctggcacc
ggccctaaagggatggttgggaaaaatggatctccgggctttcctgggtaccccggtgcg
cagggtcccaccggccctataggggactcaggtgtaccaggagcagatgggcagaaaggt
cagagaggtgcacctggaagagaaggatcctcaggggacccagggaggaacggggcccta
ggacctccagggaggaaaggggagagaggcttcgatggccaaccaggctttcctggagac
gaaggagtcaaaggaggaaagggtagcaaaggggcctttgggaaccctggaaacactaat
cttatccccatcaaaggatcaccaggtcctcctggggcacctggtctagatggtttcact
gggcaacgagggagtaagggtgttatgggaagacagggtgagccaggatatgcaggggtt
ggtggaccccctggtgtggaggctggacctcgcgggccatctggctcctgtgggcagcag
ggggacactggcctaccaggttttacgggccagaggggcatcacaggcttccctggagaa
cctggagaccagggtgaccctgggttaacaggtccgtctggcacgcctggcttcccagga
tacactggcatcaaaggtgacagaggggactccattggtgctccacctggtccgcctggt
gacaggggaccccgtggggaagacgggatacctgcttcatctggtgagaaaggtgatcaa
ggagaaccaggattctcaggcgcaccagggcctaaaggattgcctggccctccgggatcc
attgggccacctggtcctccaggtgtcttcggaccaccaggacctggtgggaggccgggg
gccgagggcccccaaggaaatccgggagtgcccggtctcgagggagagcaggggccccag
ggactcaaaggtcctccagggccgctgggcctacatgggctggatgggctgaagggtgtg
aagggagatgttggaacaagaggacctggtgtgccaggacctccagggtatgtggggcca
aaaggagacaagggatccagaggctgtcaaggcccccaggggccaatccagtctgggcca
ctggggccaaagggccaatcaggattcacaggtagtccaggacctatgggtgccacaggc
cagccaggtgttgactgtaccaaccccattccagggcactgtggagaggcaggcttccct
gggcgagatggaaaccctggcccacctggggacattgggcttcctggtcgtgctctgcca
aggactggagacgagggggataatggtgcgcctgggtttcctgggctgaagggggagaag
gggtctctaggagtctatgggctacctggcattgcaggattacctggcttcaaaggtgag
cttggtagtcctgggttaatggggattccaggatacagaggaccctctggaacttgcggc
ccacctggatgtaagggggcccagggccagaagggagacccaggaccaaaaggagaagta
gggtcagtgatgtttcaggacaacacatcagcccctcccgggcccccaggagctccaggt
ataccaggccaagaaggctttcctggagccccaggagtaaatggcagagacggaccgaaa
gggaggaatggacctttggggtccccgggttttcctgggccagatggtcctccaggtcca
ggtggagcccctggagatagaggagcccagggagataggggggtcttgggtctacagggg
gaacaaggtcccactggagaccctggaagcccaggaccaagcaccgtcttcaacgctggc
ttccttttagtgatgcacagccaatcagagactctcccttcgtgccctgctgacatggca
gagctgtggacgggctacagcctcctctacctggagggccaggaaaaagctcacacacag
gaccttggccaggcaggctcctgcatgcgcctgttcagcaccatgcccttctcctactgc
aacatgggcacctgtgactatgccagccgcaacgacaagtcctactggctttccactacg
gcagctgtgcccatgatgcctgtggctggcacagagataaaggagcacatcagccgctgt
gtggtgtgtgaagtgacctccccggccgtagctatacacagtcaggacaccagcacgcca
cagtgccctcccaaatggaggagtttgtggatggggtactctttccttatgcacacaggc
gctggtgatgaggggggtgggcagtctctgacatcgtcgggaagctgcctccgagacttt
cgtgcccagcctttcgtggagtgtcagggaccgcgtggcacgtgccactactttgccaac
gtctacagtttctggctgacgcgtgtggacaggagcggacagttcagctcctcctcacaa
gccacgctaaaggatgagaggcagcagcgcctgaatgtggggcgttgcaacgtctgcatg
aaggagtag
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