Osmerus eperlanus (European smelt): 134028994
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Entry
134028994 CDS
T10927
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04382
Cornified envelope formation
oep04510
Focal adhesion
oep04512
ECM-receptor interaction
oep04518
Integrin signaling
oep04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134028994 (col4a4)
04518 Integrin signaling
134028994 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134028994 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
134028994 (col4a4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
134028994 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oep04147
]
134028994 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
oep00536
]
134028994 (col4a4)
Exosome [BR:
oep04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
134028994 (col4a4)
Glycosaminoglycan binding proteins [BR:
oep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134028994 (col4a4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
134028994
NCBI-ProteinID:
XP_062328925
LinkDB
All DBs
Position
11:16434582..16466298
Genome browser
AA seq
1702 aa
AA seq
DB search
MCSHPRRGQETGVSVLDVEQSEAKDLKQETPRVAQMTFSICWTTCCSRHLGWLVFMLVAG
QTVFGGDILEECGGRDCTTCQCFPAKGARGPPGAPGNQGPEGNPGSYGPQGPPGEPGHRG
EEGFHGVSGPKGDEGITGPPGYPGLDGIPGYPGPGGIPGLPGLDGCKGAMGDAGFPGIPG
LNGPIGAVGFPGIKGTQGSSAVQFIQYPGIPGDPGPPGVSGLPGEQGRPGLRGSIGPIGY
DGEDGFIGAPGLRGSPGEKGRSLPGQKGDEGDQGTQGPPGPFEFVDPPEDFYIKGSQGDQ
GMKGECGPRGMNGLDSSLGIKGEMGIVGFPGVRGFPGFPGLPGLPGIKGLFGSRGLPGLI
GNEGPKGFAGEPGLKGSTGFQYINDTGPMGGLGLPGQPGLPGDVGEMGMHGPPGYLGISI
PGPDGKPGGRGVPGETGSRGEPGRFYSDGPSAGEPGKQGLLGAKGQKGQRGFPGLYCTAG
EPGEPGQDGVQGPPGGRGFPGYKGSAGACDCGPSIPLVGEPGSIGPPGLPGLPGISGPTG
LRGDSGFSGEPGERGPAGLPGFPGARGFKGPKGDLYIMDIKGKKGAMGSRGPPGQQGATG
MRGQDGFPGTPGDEGPKGDSFSGFPGERGFRGLDGPKGFPGAAGSPGLDVIGAVGLRGPP
GDAGPPGFRGPVGPKGVQGDTLPCVPSNPGAPGEKGDAGQQGLAGGTGPPGYRGLPGPDG
VKGQKGDLGQAGPTGIKGSVGCEGDVGDPGKEGLSYDGSPGSPGLRGPTGLKGPVGDSVP
GAPGPIGFTGPLGLSGPKGVPGPPGPTGLTGEAGLPGYLGTKGERGESGATGRTGSPGPS
PLCESGAKGIAGPPGPAGDQGPPGCAGVKGDVGPEGLPGTGPKGMVGKNGSPGFPGYPGA
QGPTGPIGDSGVPGADGQKGQRGAPGREGSSGDPGRNGALGPPGRKGERGFDGQPGFPGD
EGVKGGKGSKGAFGNPGNTNLIPIKGSPGPPGAPGLDGFTGQRGSKGVMGRQGEPGYAGV
GGPPGVEAGPRGPSGSCGQQGDTGLPGFTGQRGITGFPGEPGDQGDPGLTGPSGTPGFPG
YTGIKGDRGDSIGAPPGPPGDRGPRGEDGIPASSGEKGDQGEPGFSGAPGPKGLPGPPGS
IGPPGPPGVFGPPGPGGRPGAEGPQGNPGVPGLEGEQGPQGLKGPPGPLGLHGLDGLKGV
KGDVGTRGPGVPGPPGYVGPKGDKGSRGCQGPQGPIQSGPLGPKGQSGFTGSPGPMGATG
QPGVDCTNPIPGHCGEAGFPGRDGNPGPPGDIGLPGRALPRTGDEGDNGAPGFPGLKGEK
GSLGVYGLPGIAGLPGFKGELGSPGLMGIPGYRGPSGTCGPPGCKGAQGQKGDPGPKGEV
GSVMFQDNTSAPPGPPGAPGIPGQEGFPGAPGVNGRDGPKGRNGPLGSPGFPGPDGPPGP
GGAPGDRGAQGDRGVLGLQGEQGPTGDPGSPGPSTVFNAGFLLVMHSQSETLPSCPADMA
ELWTGYSLLYLEGQEKAHTQDLGQAGSCMRLFSTMPFSYCNMGTCDYASRNDKSYWLSTT
AAVPMMPVAGTEIKEHISRCVVCEVTSPAVAIHSQDTSTPQCPPKWRSLWMGYSFLMHTG
AGDEGGGQSLTSSGSCLRDFRAQPFVECQGPRGTCHYFANVYSFWLTRVDRSGQFSSSSQ
ATLKDERQQRLNVGRCNVCMKE
NT seq
5109 nt
NT seq
+upstream
nt +downstream
nt
atgtgttcgcatcctaggagaggacaagagacaggggtctcagtcttggatgtggaacag
tcagaggccaaggacttgaaacaggaaacgccccgagtggcgcaaatgacattctctatc
tgctggaccacctgttgcagccgccatctggggtggcttgtgttcatgttggtggcggga
cagaccgtatttgggggcgacatattggaagaatgtggtggacgggactgcaccacatgc
cagtgtttccctgccaaaggagcacggggtcccccaggtgctccaggtaatcagggcccg
gaggggaacccaggatcctatggccctcaggggccaccaggagaacctggacatcgtggg
gaggaggggttccatggggtgtccggtccgaaaggagatgagggtatcactgggcctcca
ggatatcccggattagatggtattcctggctatcctgggccaggaggtatcccaggcctt
ccagggctggatgggtgtaaaggggctatgggggacgctgggttcccaggcatccctggc
cttaacgggcctattggagctgtgggttttccaggaattaaaggaacacaaggaagctct
gctgttcagttcatccagtaccctggcatacctggtgaccctgggcctccaggagtgtct
ggcctgcctggtgaacaaggccgtccaggtctaagaggttctattgggccaattggttat
gatggggaagatggtttcattggtgcacctgggctaagggggtccccaggagagaaagga
agatcgttaccaggacaaaagggagatgagggagaccaaggaacacaggggcccccgggg
ccatttgaatttgtggatcctccagaagatttctacatcaaaggaagccagggggaccaa
ggtatgaagggggagtgtgggcccagaggaatgaatggacttgattcttccctaggaatt
aaaggagaaatgggaattgttggatttcccggagtcaggggctttcctggattccctggt
ctacctggcttacctggaataaaggggcttttcgggagccgtggactacctggtctgatt
ggaaatgaaggaccgaagggctttgcaggggaaccaggcctcaaaggaagcactgggttc
cagtacatcaatgatacaggacctatgggagggctggggttaccaggacaacctggtctc
ccaggagatgttggggagatggggatgcatggtcccccaggatatctaggaatatccatc
ccaggtcctgatgggaaacctggtggacgtggagttcctggggaaacaggttctcgggga
gaacctgggaggttttattctgatggtccttcagcgggcgagcctggtaaacagggcctt
ctaggagctaaaggacaaaaaggacagaggggcttcccaggtttgtactgcacagcagga
gagccaggggaaccagggcaagatggagtccaaggtccaccagggggtagagggttccca
ggttacaaaggtagtgctggtgcctgtgactgtgggccttcaataccactggtgggggag
cctggttctatcggacccccagggttgcctgggttacctggcatctcagggccaactgga
ctgagaggcgacagcggtttttcaggagaacccggagaacgtggaccagccggactgcca
gggtttccaggggctcgagggttcaaaggtccgaaaggggacctctacataatggatatc
aaaggaaagaagggagcaatgggctcccgagggccccctggtcaacagggagccacagga
atgaggggacaagatggtttcccaggtacacctggcgatgaaggcccaaagggggatagc
ttttcagggtttcctggtgagagaggttttcgaggattggatgggcctaaagggttcccc
ggagccgctggttccccaggtttggatgtcataggtgctgtgggactcagggggccccca
ggggatgcgggacccccaggattcagggggcctgttggccccaaaggagtccaaggagat
actctgccctgtgtgcccagtaatcccggagcacctggagagaagggagatgctggacaa
caaggactcgctggtgggacaggtccccctgggtacagaggacttcctggacctgacggc
gtaaagggacagaaaggagacttagggcaggcaggaccaactggaatcaaaggctctgtg
gggtgtgaaggagacgtaggagatccaggcaaagaaggcctgagctatgatggttctcct
gggtcccctggcctaaggggccctacggggctcaagggcccagttggagactcagtccct
ggagctccaggaccaataggattcactggaccactgggcctatcaggacctaagggagtt
ccagggccacctggtccaactggattaacaggtgaagcaggtttgccaggttacctgggg
actaaaggggagcgtggagagagtggtgctacaggcagaactggatctcctggaccctcc
cccttgtgtgaaagcggggccaaaggcatcgcagggccccctggaccagcaggggatcaa
ggccctccaggttgcgctggtgtgaaaggtgatgtcggaccagaaggtttgcctggcacc
ggccctaaagggatggttgggaaaaatggatctccgggctttcctgggtaccccggtgcg
cagggtcccaccggccctataggggactcaggtgtaccaggagcagatgggcagaaaggt
cagagaggtgcacctggaagagaaggatcctcaggggacccagggaggaacggggcccta
ggacctccagggaggaaaggggagagaggcttcgatggccaaccaggctttcctggagac
gaaggagtcaaaggaggaaagggtagcaaaggggcctttgggaaccctggaaacactaat
cttatccccatcaaaggatcaccaggtcctcctggggcacctggtctagatggtttcact
gggcaacgagggagtaagggtgttatgggaagacagggtgagccaggatatgcaggggtt
ggtggaccccctggtgtggaggctggacctcgcgggccatctggctcctgtgggcagcag
ggggacactggcctaccaggttttacgggccagaggggcatcacaggcttccctggagaa
cctggagaccagggtgaccctgggttaacaggtccgtctggcacgcctggcttcccagga
tacactggcatcaaaggtgacagaggggactccattggtgctccacctggtccgcctggt
gacaggggaccccgtggggaagacgggatacctgcttcatctggtgagaaaggtgatcaa
ggagaaccaggattctcaggcgcaccagggcctaaaggattgcctggccctccgggatcc
attgggccacctggtcctccaggtgtcttcggaccaccaggacctggtgggaggccgggg
gccgagggcccccaaggaaatccgggagtgcccggtctcgagggagagcaggggccccag
ggactcaaaggtcctccagggccgctgggcctacatgggctggatgggctgaagggtgtg
aagggagatgttggaacaagaggacctggtgtgccaggacctccagggtatgtggggcca
aaaggagacaagggatccagaggctgtcaaggcccccaggggccaatccagtctgggcca
ctggggccaaagggccaatcaggattcacaggtagtccaggacctatgggtgccacaggc
cagccaggtgttgactgtaccaaccccattccagggcactgtggagaggcaggcttccct
gggcgagatggaaaccctggcccacctggggacattgggcttcctggtcgtgctctgcca
aggactggagacgagggggataatggtgcgcctgggtttcctgggctgaagggggagaag
gggtctctaggagtctatgggctacctggcattgcaggattacctggcttcaaaggtgag
cttggtagtcctgggttaatggggattccaggatacagaggaccctctggaacttgcggc
ccacctggatgtaagggggcccagggccagaagggagacccaggaccaaaaggagaagta
gggtcagtgatgtttcaggacaacacatcagcccctcccgggcccccaggagctccaggt
ataccaggccaagaaggctttcctggagccccaggagtaaatggcagagacggaccgaaa
gggaggaatggacctttggggtccccgggttttcctgggccagatggtcctccaggtcca
ggtggagcccctggagatagaggagcccagggagataggggggtcttgggtctacagggg
gaacaaggtcccactggagaccctggaagcccaggaccaagcaccgtcttcaacgctggc
ttccttttagtgatgcacagccaatcagagactctcccttcgtgccctgctgacatggca
gagctgtggacgggctacagcctcctctacctggagggccaggaaaaagctcacacacag
gaccttggccaggcaggctcctgcatgcgcctgttcagcaccatgcccttctcctactgc
aacatgggcacctgtgactatgccagccgcaacgacaagtcctactggctttccactacg
gcagctgtgcccatgatgcctgtggctggcacagagataaaggagcacatcagccgctgt
gtggtgtgtgaagtgacctccccggccgtagctatacacagtcaggacaccagcacgcca
cagtgccctcccaaatggaggagtttgtggatggggtactctttccttatgcacacaggc
gctggtgatgaggggggtgggcagtctctgacatcgtcgggaagctgcctccgagacttt
cgtgcccagcctttcgtggagtgtcagggaccgcgtggcacgtgccactactttgccaac
gtctacagtttctggctgacgcgtgtggacaggagcggacagttcagctcctcctcacaa
gccacgctaaaggatgagaggcagcagcgcctgaatgtggggcgttgcaacgtctgcatg
aaggagtag
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