Osmerus eperlanus (European smelt): 134028995
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Entry
134028995 CDS
T10927
Symbol
col4a3
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04382
Cornified envelope formation
oep04510
Focal adhesion
oep04512
ECM-receptor interaction
oep04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134028995 (col4a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134028995 (col4a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
134028995 (col4a3)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
134028995 (col4a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oep04147
]
134028995 (col4a3)
00536 Glycosaminoglycan binding proteins [BR:
oep00536
]
134028995 (col4a3)
Exosome [BR:
oep04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
134028995 (col4a3)
Glycosaminoglycan binding proteins [BR:
oep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134028995 (col4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
134028995
NCBI-ProteinID:
XP_062328931
LinkDB
All DBs
Position
11:complement(16403343..16434488)
Genome browser
AA seq
1668 aa
AA seq
DB search
MKGFHCVPVVLQCVLPLCLLLGASITPGATEDSCTCAGVSRCHCDGVKGNKGERGYSGYG
GFPGVMGFPGIEGPPGSLGPKGNIGFPGLSGSKGSRGLPGKPGFSGPFGQPGVPGNEGPM
GPTGVPGCNGTKGDIGYPAPPGLPGTVGLPGVPGLQGLKGESHYFPVLLDVKGQRGVPGR
NGGKGQQGFPGLPGLPGSEGLSGIPGLPGLPGLQGEKGQEGPSPPFRGPTGQKGDQGPPG
RPGQKGIKLYAEGPKELKGEPGDVGDKGCRGLPGFPGRQGFQGNKGDQGVPGSLGKPGKE
GIPGAHGFLGEKGETGYQGPPGIEGSKGAKGDVGSNGPQGDVVRVFVKMKGEKGLPGPTG
RPGLPGDQGVVGFPGVKGASGQSIPGRPGKPGAPGYPGLKGTRGEPAPNVIGPPGATGPP
GDQGPLGDPGDPGIPDADKGYRGPPGSKGLKGIRGVPGNTGNVGEGGEKGDVCRKCTKEN
MQPGPPGPPGEPGKPGETGQNGPLGTKGYRGMDGRTGTPGPVGPFGTPGMPGSTGSKGDP
GFMVPNGNPGQIGSPGSPGLPGPDGDEGTPGYPGVKGLQGLKGNPGPPGAKGDRGPAGED
GPRGRTGQIGVHGPPGLGLPGAPGEKGTLGIQGLRGRIGEPGERGSQSETKTTPGDPGRK
GEKGLAGNPGPLGNPGITGYVGFPGQKGLKGERGLSVQGPPGPTGTKGDKGQPGAHGFPG
FGIMGRPGPSGAPGMPGPKGDFRSGLPGLLGRQGSSGEDGALGATGDSGLPGLGGPPGIP
GTNGQQGDRGNTGLDGLPGLSGEAGVCNPGAPGSEGPVGIRGVIGFTGHRGLKGVQGDQG
LPGEGMPGPLGTFGPPGFDGPPGPGGAAGLKGFRGTDGAPGVTGPVGDVGTPGVCGTPGT
DGEPGLVGRPGPKGLMGVDGARGLAGPRGLVGDVGMKGLKGLSTNIEIYGDPGDAGPPGS
TAQNGPKGDSGLAGPRGESGKNGNPGSSGPPGPPGDPGRDGQKGLPGLHGILGAQGDMGL
PGVKAEKGATGVRGEAGSSGTPGMNGPKGAKGEAGILEPGTQGRPGEKGEPGLPGVIGQN
GEKGDTGRFGSPGPLGSTGPKGREGFPGSRGSPGPSGEKGFDGLPGSRGCRGQDSLPGNQ
GLAGDPGAAGPRGSQGRDGIPGPAGEKGDMGAPDNGPRGADGERGQPGLKGDTGFPGPYG
PLGPPGPLGDMGPPGLRGPPGLPGSPGQNGVCFEGTKGERGPNGALGVPGMQGPQGPPGP
PGPGFNGDKGNKGAMGLLGTPGYRGDSGEQGSAGVDGKPGFSGDKGAIGVLGPMGPNGQK
GDAGPPGGAGVPGEKGSSGPPGPKGHPVIVVVEVIPGDPGLPGLPGPRGETGVPGAPGRQ
GSEGLQGPKGAFGLSGQSGYAGFLGDKGDRGIPGPQGIQGEPGPSGAKGPRGTPGPYYPG
PREDGFLFSRHSQGKTVPQCPGGSSLIYSGYSLLFINGNNRGHGQDLGTLGSCLPRFSTM
PFLFCNTDSTCRYASRNDYSYWLSTAEAMPSDMALISGDSLEKYVSRCAVCETKANVIAV
HSQTVQVPSCPPSWLPLWTGYSFVMQTGAGAEGSGQPLASPGSCLEEFRKIPFIECHGRG
TCNYYTDSYSYWLASLDPNNMFSKPTPQTVKGDCPGSIVSRCQVCMKQ
NT seq
5007 nt
NT seq
+upstream
nt +downstream
nt
atgaagggcttccactgtgtgccggtcgtgctccagtgtgttttgcctctatgcttgctg
ctcggagccagcatcacacctggggcgacagaggattcctgtacctgtgcaggcgtctcc
aggtgtcactgtgatggagtgaaaggcaacaaaggtgagaggggctattctggttacggt
ggatttcccggggttatgggtttcccaggaattgaaggtcctccagggtctctaggtccc
aaaggaaacatcggctttcctgggttatcaggatccaaaggttcccgggggctgcctgga
aaaccaggattttctggaccctttggacagccaggtgttccaggaaatgaaggaccaatg
ggcccaacaggagtaccaggatgcaacgggaccaagggagatattggctatccagcacct
cctgggttacctgggactgttggattacctggtgttcccggtctccaggggctaaaggga
gagtcccactacttcccagtactccttgatgtgaaagggcagcgtggagtgccagggaga
aatggtgggaagggtcaacaggggtttcctggcctaccaggcctccctggatctgaagga
ttgagtgggattccgggattaccagggttaccggggttacagggagagaagggccaagaa
ggtcctagtcctccttttcgaggaccaacaggacaaaagggcgaccaaggcccgccaggt
agacctgggcagaagggcatcaagttgtatgcagaaggccccaaagagctgaagggggag
ccaggtgatgtgggggataaggggtgtcgaggcctgcctggttttccaggtcgccagggt
tttcaaggaaataaaggcgaccaaggagtcccagggtcattgggtaaaccaggaaaggaa
ggcattccaggggcacatggatttctgggtgaaaaaggtgaaacgggctaccaggggcct
cctgggattgagggttcaaagggggcgaaaggagatgtcggttctaatggaccgcaggga
gatgtggtccgtgtgtttgtgaaaatgaaaggggaaaaaggtttgcctgggcccactgga
cgtcctggccttcctggtgatcaaggcgtagttggttttcctggagtgaagggtgcatca
gggcagtccatacctggacgcccaggaaaacctggtgctccaggatatcctggtctgaaa
gggacaagaggagaacctgcccccaatgtcatcggaccccctggggccaccggccctcca
ggagaccaaggtcctcttggtgatcctggtgaccctggaatcccagatgcagataaaggt
taccgtggaccacccggttctaaaggcctcaaaggtatcaggggagttcctggcaataca
ggaaacgttggtgaaggaggtgagaaaggagatgtctgtcgaaaatgtacaaaagaaaat
atgcaaccggggcctcctggtcctcctggagaaccaggcaagccaggggagacaggtcag
aatggccctctggggacgaaagggtacagaggcatggacggtcgcactggcacccctggt
cctgtgggtccctttggaaccccgggtatgcctggatcgactggatccaagggagatcca
ggcttcatggttccgaatgggaatccaggtcagataggctcccctggaagtccagggctt
cctggcccagatggagacgaaggcacccctggatatccaggcgtcaaaggcctgcaaggc
ctgaaaggaaaccctggacctccaggagccaagggggaccggggccccgctggggaggat
ggcccccgtggacgtacagggcagataggggtccatggacctcctggattggggttacct
ggggcccctggagagaagggtacccttggaatacaaggcctgagagggagaattggagaa
ccaggagagaggggctcacaaagtgaaaccaaaacaacgccaggagacccaggaaggaaa
ggagagaaaggcctggcaggcaatcctggacctctaggcaatcctggtatcactgggtat
gttggcttccctggccagaaggggttgaaaggggagagaggactgtctgtgcaaggccct
cctggacccacaggcactaaaggtgacaagggccagccaggcgctcatggcttccctggc
tttggaatcatgggacggcctggcccttcaggagcccctgggatgccaggccccaagggt
gatttccgctcaggcctcccagggcttcttggtcgacaaggcagctcaggggaggatggg
gctctgggggcaacgggagattctggcctgcctgggctgggtgggcctccaggtatacct
ggaacaaatggacaacagggggacagaggcaatacgggacttgatgggttgccaggtttg
tctggtgaggctggggtgtgtaacccaggtgccccgggatcagagggacctgtaggcatc
agaggagtcatcggcttcacaggacacaggggcttaaagggggtgcaaggggatcaaggc
ctgcccggagaggggatgcctgggcctttgggcacgtttggaccacccggttttgatggt
cctccaggccctggaggggctgccggcctaaagggcttcagaggaacagatggcgcacca
ggggttacaggtcctgtgggagatgtggggacgccgggggtctgtggtactccaggaaca
gatggagaacctgggcttgttggaagacctggcccgaaaggactgatgggggtggacgga
gccagagggctagctggaccacggggcttggtgggagatgtggggatgaagggtcttaaa
ggtctctcaactaatatcgaaatatacggagatcccggagacgcagggcctccgggatcc
acagcacaaaatgggccgaaaggggactcaggactcgcaggaccaagaggagaaagcggg
aagaacgggaacccagggagcagtgggcctccaggtccccctggagatcctggcagagat
ggacaaaaagggcttcctggtttacatggaattcttggtgctcaaggagacatggggttg
ccaggtgtgaaggctgagaaaggtgccacaggtgtccgtggagaagccggctcatctggg
acaccaggaatgaatggacctaaaggggctaaaggagaggccggcatccttgaaccagga
acccaggggagacctggggagaagggcgagccagggttgccgggagtgataggacagaat
ggggagaagggtgatactggaaggtttgggtctccaggacctttagggtccacagggccc
aaaggaagagagggattcccaggatctcgaggcagcccagggccctctggggagaaaggt
tttgatggacttcctggttctcgtggttgccgtggccaggatagcctgccagggaaccaa
gggcttgcaggtgacccgggtgcagccgggcccagagggagccagggcagggacggcatc
cctggacctgcaggagagaagggggacatgggggcccccgataatgggccaagaggagca
gatggagagagaggccagccgggactgaagggggacaccggcttccctggaccctatggt
ccccttggtccccccgggcctttaggggatatgggccccccaggcctgcgtggtccccca
ggactccctggtagtcctggtcagaatggagtctgctttgaggggacaaaaggggaacgt
ggcccaaacggtgcccttggagtcccaggaatgcagggcccccaggggcccccgggtcca
ccggggccagggttcaatggcgataaggggaacaaaggtgccatgggccttctgggaacg
cccgggtacaggggagatagtggagagcaaggcagtgcgggtgtcgatggaaagcctggt
ttttctggggacaagggtgcaattggtgttcttggaccaatggggcccaatggtcagaaa
ggagacgcaggtcctccggggggagcaggtgttcctggagagaaaggatcatctggacca
ccaggaccaaagggccatcctgtgattgttgttgtggaggtgatccctggagatccgggt
ctgccagggcttccaggacccaggggggaaaccggagttcctggagctccagggagacaa
ggatcagagggactccaaggccctaaaggggcctttggtttgagtgggcaaagcgggtat
gccggtttccttggagataagggagacagagggattcctggaccacaaggtatacaaggt
gagccagggccttcgggagcaaagggccccagagggaccccgggtccctactaccctggc
cccagagaggacgggttcctgttcagcagacacagccagggcaagaccgttccccagtgc
ccaggagggagcagcctgatctactccggatactctctcctcttcattaacggcaacaac
agaggacacggtcaagacctcggtaccctgggcagctgcttacctcgcttctccaccatg
cccttcctcttctgcaacaccgacagcacgtgtcgctacgcctcgcgcaacgattactcc
tattggctgtccacagctgaggccatgcccagcgacatggctctgatatccggagactct
ctagagaaatatgtcagcaggtgtgctgtgtgtgagaccaaagcaaacgtgattgctgtc
cacagtcagaccgtacaggtcccctcttgtccgccaagttggctccccttgtggactggc
tactcatttgtcatgcaaacaggagcaggagcggagggctcagggcagcctctggcctcc
cccggctcctgcctggaggagttccggaagattcccttcatcgagtgccacggacgaggg
acttgcaactattacactgactcctacagctactggctggcttccctggaccctaacaac
atgttcagtaaacctacgcctcagacagtgaagggggattgcccaggaagcattgtcagc
cgctgtcaggtctgtatgaagcagtag
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