Osmerus eperlanus (European smelt): 134029424
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Entry
134029424 CDS
T10927
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
134029424 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oep03021
]
134029424 (supt5h)
03019 Messenger RNA biogenesis [BR:
oep03019
]
134029424 (supt5h)
Transcription machinery [BR:
oep03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
134029424 (supt5h)
RNA polymerase I system
134029424 (supt5h)
Messenger RNA biogenesis [BR:
oep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
134029424 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW2_Spt5
KOW7_SPT5
KOW
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
KOW5_SPT5
DUF150_C
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
134029424
NCBI-ProteinID:
XP_062329505
LinkDB
All DBs
Position
11:complement(16780269..16796062)
Genome browser
AA seq
1085 aa
AA seq
DB search
MSDSEDSDFSDAQSDRSSEAEEAENEEEQASPTGSDKVAEEEGEDLEDEEEYDEEEEEDD
DDRPRKKPRHGGFILDEADVDDEYEDEDPWEEGAEDILEKEEAEVSNIDHVVLDEDNSGS
RRLQNLWKDSREEALGEYYMRKYAKSSGGEHFSGGSEELSDDITQQQLLPGVKDPNLWTV
KCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVESYKQTHVKAAIEGV
GNLRMGFWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEPSQNT
ISLKMIPRIDLDRIKARMSMKDWFAKRKKFKRPAQRLFDAEKIRSLGGEVSHDGDFMIFE
ANRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTEASGKEREHNLQA
GDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHVKVIA
GRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGELIQL
DPQTVGVIVRLERETFQILNMHGKVMTVRHQAVNRRKDNRFAVALDSEQNNIHVKDIVKV
IDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFPVGGF
APMSPHISSPMHHGGGGQQQRGGGGGGGGGGGGGMGRGRGRRDNDLIGQTVRISQGPYKE
TLLVSNMESERRCVGVEVGCMAVCDGVCVDDRGAKRHSGQTSTHGRTPMYGSQTPMYGTG
SRTPMYGSQTPLHDGNRTPHYGSQTPLHDGSRTPGQSGAWDPNNPNTPSRADDEYDFGYD
DEPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTEQYSPYAAPSPQGS
YQPSPSPQSYHQVAPSPLGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPG
GYNPHTPGSNIDQASSDWVTTDILVRVKDTFMDLQVVNQSGVIRSVTGGMCSVFLQDTEK
VVSISSEHLEPVTPTKNNKVKVILGEDREATGILLSIDGDDGIVRMELDDQLKILNLRFL
GRLEP
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacagtgaggatagcgacttctctgacgcccagagtgaccgaagcagcgaagcc
gaagaggctgagaatgaggaggaacaggccagtccgactggtagtgacaaggtagcagag
gaggaaggcgaggatctggaggatgaagaggagtatgatgaggaagaggaggaggatgat
gacgatcgccccagaaagaagccccgccatggggggttcatcctggacgaagctgatgtg
gacgatgagtacgaggacgaggatccgtgggaggaaggagcggaggacatcttggagaaa
gaagaagcagaggtgtccaacatcgatcacgttgttctggatgaggacaactcagggtcc
cgccggctgcagaacctctggaaggattccagagaagaagcgttgggggagtactacatg
aggaagtatgccaagtcttctggaggagaacatttctcaggtggatccgaggagctctcc
gatgacatcacccaacagcagttacttcctggggtcaaggaccctaatctttggacagtc
aagtgtaagataggggaggagagggcaacagccattgcactgatgaggaaattcatcgcc
taccagtttacagacacgcccctgcagatcaagtcggtggtagctcccgagcatgtgaaa
ggctacatctacgtggagtcctacaagcagacccacgtgaaggcggccatcgagggcgtg
ggcaacctgaggatgggcttctggaaccagcagatggtgcccatcaaggagatgacggac
gtcctgaaggtggtcaaggaggtcaccaacctcaagcccaagtcctgggtccgcctcaag
agaggcctctacaaagacgacatagcccaggtggactacgtagaaccaagccagaacacc
atatctctaaagatgatcccaaggatagacctggacaggatcaaagcccggatgagcatg
aaagactggtttgccaagaggaagaagttcaaaagaccggctcagagactgtttgatgct
gagaagatcaggtcactggggggtgaggtcagccatgatggagacttcatgatctttgag
gccaaccgctacagccgcaaaggctttctcttcaagagcttcgccatgtcagctgtgatc
acagagggggtgaagcccaccctgtctgagctggagaagtttgaggaccagcctgaaggc
atcgacctggaggtggtgactgaggcttcaggtaaggagcgtgaacacaacctccaggca
ggtgacaatgtggaggtgtgtgagggagagctcatcaacctgcagggcaagatcctgagt
gtggacgggaacaagatcaccatcatgcccaaacacgaggacctcaaggaccccctggag
ttcccggctcatgagttgaggaagtacttccgtatgggtgatcacgtgaaggtgatcgcc
ggccgctacgagggagacaccggcctcatcgtccgtgtggaggagaacttcgtcatcctg
ttctctgacctcaccatgcacgagctgaaagtactgccgcgggacctgcagctgtgctct
gagacggcatcgggcgtggacgcgggcgggcagcacgagtggggagagctgatccagctg
gaccctcagacggtgggggtcatcgtccggctagagagggagaccttccagattctgaac
atgcacggcaaggtgatgacggtgcgccaccaggcggtcaaccggcggaaagacaaccgc
ttcgcagtggcgctggactcggagcagaacaacatccacgtgaaggacatcgtcaaggtg
atcgacgggccgcactcgggccgggagggagagatccgtcacctgttccgagggtttgcc
ttcctgcactgcaagaagctggtggagaacggaggcatgttcgtctgtaagacacgccac
ctcgtattggctgggggctccaagcccagagatgtgaccaatttccccgtggggggattt
gcacctatgagccctcatatcagcagccccatgcaccacggaggagggggtcagcagcag
aggggcggagggggaggaggaggagggggaggaggagggggaatggggcgtggccgaggc
aggagagacaacgacctgattggccagactgtccgtatctcccagggaccgtacaaagaa
accctcctggtgtctaatatggagagtgaacgccggtgtgttggtgtcgaggttgggtgt
atggcagtgtgtgacggtgtctgtgttgacgacaggggagctaagagacacagcgggcag
acctccacccacggacgcacccccatgtacggctcccagacccccatgtacggcaccggc
tcccgtacccccatgtacggctcccagacgccgctgcacgacggaaaccgcacgcctcat
tacggctctcagaccccgctgcatgatgggagcaggacgccgggacagagcggggcgtgg
gaccccaacaaccccaacacaccctccagggcggatgacgagtacgactttggttacgat
gatgagccgtcgccgtccccgcagggctacgggggcacgcccaacccccagacccccggg
taccccgaggtcccctccccccaggtcaacccccagtacaacccccagactcctggaacc
cccgccatgtacaacacagagcagtattccccctacgcggccccttctccccagggctcc
taccagcccagcccctccccccagagctaccaccaggtggctcctagtcccctgggctac
cagaacacgcactcccctgccagctaccaccccacgccctcgcccatggcctaccaggcg
agtccgagccccagccctgtgggctacagccccatgaccccgggagccccgtcccccggg
gggtacaacccccacacccccggctccaacatcgaccaggcatccagcgactgggtcacc
accgacatcctggtccgggtcaaggacaccttcatggacctgcaggtggtcaaccagagc
ggggtcatacgcagcgtcaccggtggcatgtgctcagtgtttctgcaggacactgagaag
gtggtgagcatctctagtgaacacctggagccggtcacgcccaccaagaacaacaaggtg
aaggtgatcctgggggaggaccgtgaggccacagggatcctgctcagtatcgacggagac
gacggcatcgtcaggatggagctagacgaccagctgaagatcctcaacctccgcttcctg
ggccgcctggagccctga
DBGET
integrated database retrieval system
