Osmerus eperlanus (European smelt): 134029486
Help
Entry
134029486 CDS
T10927
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03030
DNA replication
oep03420
Nucleotide excision repair
oep03430
Mismatch repair
oep03440
Homologous recombination
oep03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
134029486 (rpa1)
03420 Nucleotide excision repair
134029486 (rpa1)
03430 Mismatch repair
134029486 (rpa1)
03440 Homologous recombination
134029486 (rpa1)
03460 Fanconi anemia pathway
134029486 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oep03000
]
134029486 (rpa1)
03032 DNA replication proteins [BR:
oep03032
]
134029486 (rpa1)
03400 DNA repair and recombination proteins [BR:
oep03400
]
134029486 (rpa1)
Transcription factors [BR:
oep03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
134029486 (rpa1)
DNA replication proteins [BR:
oep03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
134029486 (rpa1)
DNA repair and recombination proteins [BR:
oep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
134029486 (rpa1)
MMR (mismatch excision repair)
134029486 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
134029486 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
134029486
NCBI-ProteinID:
XP_062329579
LinkDB
All DBs
Position
11:complement(14477297..14504033)
Genome browser
AA seq
603 aa
AA seq
DB search
MTIKLTEGAIEALTKGSDTNSPILQLLNIRKIDGGNGPVRFRLMMSDGLHSMSSFMLSTQ
LNPMAEDNRLAPNCLCQLKRNVTNVLKDGRRVVVILDMEVVTPAEEVGCKIGEPTPYTEG
QSKAPQAASNLPVRPLQPQNGSDAPMHRGPNKDFVKKAPPACPNTPGGSSKVVPIASLNP
YQSKWTIRARVTNKSGIRTWSNSRGDGKLFSMEIVDESGEIRVTGFNTEVDKFYSLIETG
KVFYISKGSLKIANKQYSSLKNDYEMTLNGDSSIVPCEDSTDVPMVQCDFVSIADLETRE
KDSVLDVIGVCKSVDEVTRLTTKTSREVSKRTLNLMDMSGKVVSVTLWGEEAEQFDGSGQ
PVLAIKGAKLSDFGGRSLSASFSSTLMVNPDIPEAYKLRGWYDKEGHAMDAQSLTEMRGG
GGGGGNTNWKMLSDIKTEHLGHGDKADYFSCIATIVYLRKENCLYQACPSQDCNKKVLDQ
QNGLFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKDS
NETAFEEAFNQANFQTFVFRSRVKMETYNDESRIKATVMDVKPVDHREYSKRLIMNIRKF
AAQ
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgactatcaagctgacagaaggcgcaatagaggctctgaccaaaggcagtgacactaac
agcccaatacttcaattattgaacatccgtaagatcgatggaggtaacgggcctgtccgc
tttcgtctcatgatgagtgatggactgcattcaatgtcttcattcatgctgtccacccag
ctcaaccccatggccgaggacaaccggctggcccctaactgtctctgccagctcaagagg
aacgtcaccaacgtcctcaaggatggacggcgtgtggtggttattctggacatggaggtg
gtgacgcctgcagaggaggtcggatgcaagatcggagaacccaccccctatacagaaggc
cagagtaaagccccccaggcagcctctaacctccctgtacggcctttacagcctcagaat
ggcagcgatgcccccatgcacagaggtcccaacaaagactttgtcaagaaggccccccct
gcgtgccccaacacccccgggggctcctccaaggtggtgcccatcgccagcctcaacccc
taccagtccaagtggaccatccgggcccgggtcaccaacaagagcggcatccgtacctgg
agcaactcccgcggcgacggcaagctcttctccatggagatcgtggatgagagcggagag
atccgagtgacaggcttcaacacggaagtggacaagttttacagccttatcgagactggc
aaggtgttctacatctccaagggctccctgaagatcgccaacaagcagtactcgtccctg
aagaacgactacgagatgaccctgaacggagactccagcatcgtgccctgcgaggacagc
accgacgtgcccatggtgcagtgcgacttcgtctccatcgccgacctggagacccgcgag
aaggacagcgtcctggatgtgatcggcgtgtgtaagagcgtggacgaggtgacccgcctc
accaccaagacgagccgcgaggtgtccaagaggaccctgaacctgatggacatgtctggg
aaggtggtgtctgtcacactgtggggagaggaggcggagcagtttgacggctccgggcag
cccgtcctggccatcaaaggagccaagctgtctgacttcggagggcggtctctctctgct
tccttcagcagcactctcatggtcaaccctgacatcccagaggcctacaagctccgggga
tggtatgacaaggagggccatgccatggatgctcagtctctgacggagatgaggggagga
ggaggaggtggaggaaacaccaactggaagatgctgtctgacatcaagactgaacacctg
gggcatggagacaaggctgactatttcagctgcatcgccaccatagtgtacctgcgtaag
gagaactgtctgtaccaggcctgccccagccaggactgcaacaagaaggtgttggaccag
cagaacgggctcttccgctgtgagaagtgtgacaaagagttccccaacttcaagtaccgt
ctcatcctctctgccaacattgcagattacggggacaaccagtgggtgacgtgcttccag
gagagcgcggaggccatcctgggccagaacgctgcctacctggggcagctcaaggactcg
aatgaaacagcctttgaggaagccttcaaccaggctaacttccagaccttcgtgttccgg
agccgagtcaagatggagacctacaacgacgagtcccggatcaaggccacggtgatggac
gtcaaacccgtggaccaccgagagtacagcaagaggctcatcatgaacatcaggaagttc
gctgcccaatga
DBGET
integrated database retrieval system
