Osmerus eperlanus (European smelt): 134029686
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Entry
134029686 CDS
T10927
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04136
Autophagy - other
oep04140
Autophagy - animal
oep04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
134029686 (atg16l1)
04136 Autophagy - other
134029686 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
134029686 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oep04131
]
134029686 (atg16l1)
03029 Mitochondrial biogenesis [BR:
oep03029
]
134029686 (atg16l1)
Membrane trafficking [BR:
oep04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
134029686 (atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
134029686 (atg16l1)
Mitochondrial biogenesis [BR:
oep03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
134029686 (atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
ATG16
Beta-prop_THOC3
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_Gbeta
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_Aladin
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_NWD2_C
Beta-prop_ACSF4
WD40_RFWD3
eIF2A
Tricorn_2nd
Beta-prop_VPS8
NET2A
PUMA_CC
Beta-prop_DCAF12
AP5B1_middle
CC_Bre1
DUF7310
DUF7914
HEF_HK
Motif
Other DBs
NCBI-GeneID:
134029686
NCBI-ProteinID:
XP_062329941
LinkDB
All DBs
Position
11:10833503..10841704
Genome browser
AA seq
620 aa
AA seq
DB search
MAERRVECSWKKHIAEQLKQRDRVQRQAFEEIIHQYNRLLEKSDLQTVLSERYQTDKYDL
QSRHEASPGADTTRNDALQQEMAQMRIKHQEELTELHKKRGELAQSVIELNNQIQQKDKE
IQSNEAKMLEYQQQIAKLEGDCKELHNYLQDLERANQTLKDEYDALQITFSALEEKLRRT
TEDNQELVSRWMAEKSQEANRLNAENEKDCRRRQAKLQKELADAAKEPLPFDPDDDIEVV
PEDSGKVPGEASPNRPLSRTPSKRISQPPPGGLLDSISNIFGVSESVQPGLLPSDSRRRP
GNSFSSSPENAEAPSGVCAEVHVPSTALHVFEAHDGEVNAVRFSPGSRILATGGMDRRVK
LWEVVSGRCEPKGALTGSNAGITSIEFDSTGSYLLAASNDFASRIWTVDDYRLRHTLTGH
SGKVLSARFLLDNARIVSGSYDRTLKLWDLRSKVCMKTVFAGSSCNDIVCTEQCVMSGHF
DKKVRFWDIRAESIVRELELLGKVTSLDLNHDRTELLACSRDDLIKIIDLRTNAVRQTFS
APNFKCGADWTRVTFSPDGSYVAAGSADATLYVWNTLTGKLDCTLDKNHSTAINAVSWSP
SGAFVVSVEKGSKAVLWSDM
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcgccgtgtggagtgctcatggaagaagcacatcgcagagcagctgaagcag
agagaccgtgtgcaacgacaggcctttgaggagatcatccaccaatataatcgtctgttg
gagaagtcagatctacaaactgtactctcagaaagatatcaaactgacaaatatgaccta
cagagcagacatgaggccagcccaggggcagacaccacccgtaatgatgccttacagcag
gagatggcccagatgagaatcaaacatcaggaggaactgacagagctgcacaagaaacgt
ggcgagctggcccagagtgtgattgaacttaataaccagattcagcaaaaagacaaggag
atccaaagcaatgaggccaagatgctggagtatcagcagcagatagctaaactggagggg
gattgcaaagagctacacaactacctgcaggacctggagagggccaaccagactctgaag
gatgagtatgatgccctgcagatcaccttcagtgccctggaggagaaactgcggcgcacc
accgaagacaaccaggaactggtgtcccgctggatggctgaaaagtcccaggaggccaac
cggctcaatgctgaaaatgagaaggactgtagacgtaggcaagctaagctccagaaggaa
ctggcggatgctgctaaggagccactgccctttgacccggatgatgatattgaggttgta
ccagaggattctgggaaagtgcctggagaggcttcgcctaaccgtccgcttagtcgtact
cccagtaaacgcatatcacagcctcctccaggtggtctattggactccatctccaacata
tttggcgtgtctgagtctgtgcagcctggactcctcccatcagactccaggcgtcgtcct
ggcaactccttcagctcctcacctgagaatgccgaagctccgtctggggtgtgtgcggaa
gtccatgtgccctcgaccgcactgcatgtgtttgaggcccatgacggggaggtgaacgca
gttcgtttcagtcctggttctcgaatcttggccacgggggggatggaccgtcgggtcaaa
ctatgggaagtggtctcaggtcgctgtgaacccaagggtgcgctgacaggcagcaatgct
ggtataaccagcatcgagtttgacagtactggctcatacttgctggcagcctccaatgac
tttgctagcaggatctggactgtggacgactacagactgaggcacacgctcacgggtcac
agtgggaaggtgctctctgcccgcttcctccttgacaacgcacgcatcgtatctggaagc
tatgataggacgcttaagctgtgggacctgcgcagcaaagtctgtatgaagacggtgttt
gctggctccagctgtaatgacatcgtctgcaccgagcagtgtgtcatgagtggtcacttt
gacaagaaagtacgcttctgggacatcagagctgagagcatcgtgcgtgagctggagctc
ctgggcaaggtcacgtctctggatctgaaccacgaccgcaccgagctgctcgcctgctct
agggatgatctcatcaagatcatcgacctgcgtaccaacgccgtccgccagaccttcagc
gctccgaacttcaagtgtggagctgactggaccagagtgaccttcagtcctgatggcagt
tatgtagcagcgggctctgcagatgccaccctgtatgtgtggaacacactgacagggaag
cttgactgcacgttagacaagaaccacagcactgccatcaacgctgtttcctggtcaccg
tctggagctttcgtggtcagtgtggagaagggaagcaaagcggttctctggtctgacatg
tga
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