Osmerus eperlanus (European smelt): 134030764
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Entry
134030764 CDS
T10927
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
134030764 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oep03400
]
134030764 (msh2)
DNA repair and recombination proteins [BR:
oep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
134030764 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
134030764
NCBI-ProteinID:
XP_062330039
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All DBs
Position
12:2604012..2613175
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AA seq
926 aa
AA seq
DB search
MAVQPKQNLSMDSVSEHGFLKFFFSMPDKPDTTFRIFDRNDYYTVHGKDATFAAKEVFKT
NGVIKNLGSGSRKLESVVLSKLNFEAFVRDLLLVRQYRVEVYKNNGKTNRDHDWQIEFKA
SPGNLTQFEEILFGGGAGGEGCAGVVGVRLAVGGDGQRVVGVGYVDAALRTMGVCEFPDN
ETFSNLESLLVQISPKECLLPQGDNSSDTAKLREVVQRGGVLLSDRKRAEFNSKDVVQDL
NRLLRAKRGETVASNTLPELDKQVAMSCLAAVVRYLELLSDESNFNSFSLTPLELGQYMR
LDNAAIHALSLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKKRIEERLD
LVESFVCDAELRQTCQTDLLRRFPDLHRLSKKFHRHSATLQDCYRGYQAVNQISALLLAL
ERYSGSHQVLLEAVFLSPLRDLEADFTKYQEMIETTLDMNQVDNHEFLVKASFDPVLSEL
RETMDTLEKSMQAVLSSAARDLGLDSGKTVKLESSSALGFYLRVTCKEEKSLRNNKKFTT
LDVQKNGVRFTNSKLSSLNEEYTKNRQEYEEAQNAIVKEIISIASGYVDPLQGLSDVIAL
LDGVVSFAAASVSAPVPYVRPQLLEGASRLVLQQARHPCMESDVDTAFIPNDITFVKGEK
SFYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCDKAELSVIDGVLARVGAGDSQVKGV
STFMAEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEHIASKIGCFCLFAT
HFHELTALATHHPTVHNLHVTALTSQHTLTMLYRVRPGVCDQSFGIHVAEMANFPAAVVA
MAKEKAAELEEFQEPAGGEGEEPDDKRRRIDKQEGEGLIQDFLVKVKSLPAATMTDEEVK
AQLKKMKAELVAHNNSYITELLGSRS
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccgaagcagaacctgtctatggacagtgtgtccgaacatggctttctt
aaattctttttctctatgccggacaaaccagacactacgtttcggatattcgaccggaat
gactactacacagtgcacgggaaagacgctacatttgctgctaaagaggtttttaagacg
aatggagtcatcaaaaatctgggttctggaagccgcaagttggagagtgttgtcctgagc
aagctcaatttcgaggccttcgtgagagacttgctgcttgttcgtcagtacagagtggag
gtttacaaaaacaatggcaagaccaacagagaccacgactggcagatagagttcaaggca
tccccagggaacttgacccagtttgaagagattttgtttggaggaggggccgggggagaa
ggatgtgctggagtggtgggggtacggttggctgttgggggggatggacagcgcgtggtg
ggcgtgggctacgtggacgcagcactgaggaccatgggagtgtgtgagtttcccgacaac
gagacgttctccaacctggagtctctcctggtccagatcagccccaaggagtgtctgcta
ccccaaggagacaacagcagtgacacggccaagctacgcgaggtggtgcagcgtggaggg
gtgctgctgtcggacaggaagagagccgagttcaacagtaaggatgtggtgcaggatctc
aacaggctgctccgtgccaagagaggagagaccgtcgcaagcaacacactcccggagctg
gacaagcaggtggccatgtcgtgcttggcagctgttgttcgctacctggagctgctgtct
gatgagtccaacttcaactcgttcagtctgaccccgctggagctgggccagtacatgagg
ctggacaacgctgccatccatgccctcagcctcttccagggttcgcccgacgacaccagt
ggcgctcactcattggctgggttgctgaataagtgtcgcaccccccagggccagcgattg
gtcaaccaatggatcaagcagccactcatggacaagaagaggatagaggagagactggac
ctggtggagagtttcgtgtgtgatgcggagctcaggcagacctgccagactgacctgctc
cggcgtttccctgacctccaccgactgtccaagaagttccaccgccactctgctacgctg
caggactgttaccgcggttaccaagctgtcaaccagatctctgccctgctattggccctg
gagcgctactctggaagtcaccaggtgctgctggaggccgtcttcctgtccccgctccga
gacctggaggcagacttcaccaagtaccaggagatgattgagaccacgctggacatgaac
caggtggacaaccatgagtttctggtgaaagcgtcgtttgacccggtgctgagtgaactg
agggagaccatggacaccttggagaagagcatgcaggctgtcctgtccagcgcagccaga
gacctgggtttagattcagggaagactgtgaagttggagagtagctctgcgctggggttc
tacctgagggtcacctgcaaagaggagaagagtctgaggaacaacaagaagttcaccact
ctggacgtccagaagaacggagttcgattcaccaacagtaagctgagcagcttgaacgag
gagtacaccaagaacagacaggagtacgaggaggctcagaatgccattgtcaaggagatc
atcagcatcgcctcaggttacgtggaccccctgcagggtctgagtgatgtcatagccctg
ctggacggcgtggtgagcttcgccgcagcgtctgtgtccgccccggtgccctacgtgcgg
ccccaactcctggagggggcgagcaggctggtgctgcagcaggccagacacccatgcatg
gagagcgacgtggacacagccttcatacccaacgacatcaccttcgtcaagggggagaag
agcttctacatcatcacagggccaaatatgggtggcaagtctacgttcatccgccaagtg
ggcgtcattgccctgatggcccagatcggctgcttcgtgccatgtgacaaggcggagctg
agtgtgattgacggcgtgctggcccgcgtgggggcaggggacagccaggtgaagggagtg
tcaaccttcatggctgagatgctggaaaccgccgccatcctccgttcggccacggagaac
tcgctgatcataattgatgagctgggtcgaggcacatctacgtacgatggcttcggtctg
gcctgggccatcagtgaacacatagcatccaagatcggctgcttctgcctgtttgccact
cacttccacgagctgacggcgctcgctacacaccatcccaccgtacacaacctgcatgtg
actgctctcacttcccaacacacactcaccatgctgtaccgggtcagaccaggtgtgtgc
gatcaaagttttgggattcacgtggcggagatggccaactttcctgctgccgtggttgcc
atggcgaaggagaaggctgcagagctggaggagttccaggagccagcaggcggcgagggg
gaggagcctgatgacaagagacgccgtatagataaacaggagggtgagggcctgatccag
gacttcctggtcaaggtgaagtccctgcccgccgccaccatgacggatgaagaggtgaag
gcccagctgaagaagatgaaagcagagcttgtcgcccataacaacagctacatcacagag
ctcctgggctccaggagctag
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