Osmerus eperlanus (European smelt): 134031395
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Entry
134031395 CDS
T10927
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
oep Osmerus eperlanus (European smelt)
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oep03016
]
134031395 (trub1)
Enzymes [BR:
oep01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
134031395 (trub1)
Transfer RNA biogenesis [BR:
oep03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
134031395 (trub1)
Prokaryotic type
134031395 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-GeneID:
134031395
NCBI-ProteinID:
XP_062330998
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All DBs
Position
12:18122790..18127296
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AA seq
297 aa
AA seq
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MAGIVTNGSVPKHASLSTLQSLNGLFAIYKKEGPTSADVLNSLKEALLKEAGVKNPNPRK
RKKQALKIGHGGTLDSAASGVLVVGIGNGTKMLSTMLAGSKKYRAVGELGKATDTLDATG
SVVHQEKYDHITQELLQEKLKIFTGDIMQVPPLYSALKKDGKRLSVLLKQGHEVEAKPAR
PVTVHNISLLDFQPPGFTLDIESGGGFYVRSLVDDLGKALASCAHVKELVRTKQGQFTLD
LCLREEQWTLHHLLQSLQPCPGSGVNGETVNPAAPVPGLGVEAGLGVEAGPDQRGDL
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atggctggaattgtgacaaacggatctgtaccaaaacatgcttctttatcaactttacag
tctttgaatggactttttgccatttataaaaaggaaggacccacgtccgcagatgtgttg
aactcattaaaagaagcactcctcaaagaggcaggtgttaaaaaccctaatcctcgcaag
aggaagaaacaagctctgaaaatagggcatggaggtactctggacagcgctgcctcgggt
gttctcgttgttgggatagggaacggtacgaagatgctcagtacaatgttggctggctct
aaaaaatacagagcggtcggtgagttggggaaagccacagacaccctggatgccaccggc
agtgtggttcaccaggagaaatatgatcacatcacccaggagctgctgcaggagaagctg
aagatcttcactggtgacatcatgcaggtcccacctctctactctgcgctgaagaaggat
ggcaagcgtctgtctgtcctgctgaagcagggccacgaggtggaggccaagcccgcccgg
cccgtcaccgtccacaacatctccctgctggactttcagcctcctggcttcaccctggat
atagagtctgggggtggattctacgtgagaagcttggtggacgatcttggaaaagcgctg
gcgtcttgcgcccatgtgaaggagctggtccggaccaagcagggccagttcaccctggac
ctctgtctgagagaggagcaatggaccctgcaccacctcctccaatcactgcagccctgc
ccggggtcaggggtcaacggagagactgtgaacccggccgctcccgttcccggcctgggg
gtggaggcgggcctgggggtggaggcgggcccagatcagagaggggatctgtag
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