Osmerus eperlanus (European smelt): 134031550
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Entry
134031550 CDS
T10927
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03040
Spliceosome
Brite
Enzymes [BR:
oep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134031550
Spliceosome [BR:
oep03041
]
Complex C
Other components
Step II factors
134031550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
T2SSE
AAA_16
PhoH
TsaE
ABC_tran
Flavi_DEAD
Sigma54_activ_2
Presenilin
Motif
Other DBs
NCBI-GeneID:
134031550
NCBI-ProteinID:
XP_062331219
LinkDB
All DBs
Position
12:15009588..15017718
Genome browser
AA seq
1211 aa
AA seq
DB search
MADIGVEDLEQLEYLSLVSKVCTELDNHLGISDKDLAEFVISLAEKQPTFEGFKSLLLKN
GAEFTDSLVSNLLRLIQTMRPPSKASSSKVSEPVVKQKNEKDKLKELFPALCRPNEPIPK
GMLDDDDVKIAADVMKELEMFMPSVSGSDSKSKSKSDRKRRHSRSRSRSKDRDRDRRRRH
RSRSRSRSRSRDRTRHRDRDRERDRDRDHSKKHSSRWADRTPSPRRDRDRDVDKHSEDRW
KDKHVDRPPPEEPSVGDIYNGKITSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANV
ADVVTKGQRVKIKVLSFTGSKTSLSMKDVDQETGEDLNPNRRRNTGPDGHEETAMRNPDR
PSNLNLGHAPEVEDDTLERKRLTKISDPEKWEIKQMIAANVLSKEEFPDFDEETGILPKV
DDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSALAKERREV
KQAQREAEMDSIPMGLNKHWVDPLPDVDGRQIAANMRGIGMMPNDIPEWKKHAFGGNKAS
YGKKTQLSILEQRESLPIYKLKEQLIQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTT
RGKIGCTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRE
CLIDPDLGQYAIIMLDEAHERTIHTDVLFGLLKKTVMKRKDMKLIVTSATLDAVKFSQYF
YEAPIFTIPGRTYPVEVLYTKEPETDYLDASLITVMQIHLTEPPGDVLVFLTGQEEIDTA
CEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTID
GIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKTYRLYTERAYR
DEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDD
EGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALAD
QKKAKFHQPEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRH
KLDVVSCGKATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWV
VYHELVLTTKEYMREVTTIDPRWLVEFSPAFFKVSDPTRLSKQKKQQRLEPLYNRYEEPN
AWRISRAFRRR
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atggcagacatcggggtagaagaccttgaacagctcgagtatctatctttggtgtccaaa
gtatgcacagaactcgacaaccatctgggaataagcgacaaagatcttgctgagtttgtt
attagcctggcagagaagcaaccaacatttgaaggctttaagtcactactgttgaaaaat
ggagcagagtttacagattccctcgtcagcaatttgctcagacttattcaaactatgcga
cctccgtctaaggcgtcttcaagcaaagtctcagagcctgttgtcaagcagaagaatgag
aaggacaagctgaaagagctgttcccagctttgtgcagaccaaatgagccgattcctaag
ggcatgctagatgatgatgatgtcaaaatagcagcagatgtcatgaaggagttggagatg
ttcatgccaagtgttagtggaagtgactcaaaaagcaagagcaaatctgaccggaagagg
cgccacagcagaagcagaagccgtagcaaggaccgggacagagaccggcgtagacgccac
cgctcccgctcgcgctccaggtcccgttctagggaccgcacccgccacagagacagggac
agggagagagaccgggaccgagaccacagcaagaagcactcgtctcgctgggctgaccgc
acccctagcccccgtagagacagagaccgagatgtggacaagcactctgaagaccgctgg
aaagacaaacatgtcgaccgaccacctccggaggagccttctgtgggggacatctacaac
ggcaaaatcaccagcatcatgcagtttggctgcttcgtgcagctggagggcctgagaaag
cgctgggagggattggttcacatctccgagctgcgcagagagggacgcgtggccaacgtg
gccgatgttgtcaccaaaggtcagagggtcaagattaaagtgttgtctttcaccgggtcc
aagaccagcctcagcatgaaggatgttgaccaggaaaccggggaggatctgaaccccaac
aggaggaggaacactggccctgacggccacgaggagacggccatgaggaaccctgaccgc
ccctccaacctcaacctcggccacgcccccgaggttgaggacgacactttggagcgcaag
agactcaccaaaatatcagacccggagaaatgggagattaaacagatgattgctgctaac
gttctgtctaaagaggagttcccagactttgacgaagagactggtatccttcccaaagtc
gacgatgaagaagatgaagatctggagattgagctggtggaggaagagcctccgttcctg
cgaggacacaccaaacagagcatggacatgagccctgtcaagatcgtaaaaaatccggac
ggttcgctgtcccaggctgccatgatgcagagtgctctggcgaaggagaggagggaggtg
aagcaggcccagagggaggctgagatggactctatccccatgggcctcaacaagcactgg
gtcgaccctctgcctgatgttgacgggagacaaatcgcagccaacatgagaggcattggc
atgatgcccaatgatatcccagagtggaagaaacatgcctttgggggcaacaaggcatcg
tacgggaagaagactcagctctccatcctggagcagagagagagcctgcccatctacaag
ctcaaggagcagttaatccaggctgttcatgacaaccagatcctgattgttattggagag
acaggttctggaaaaaccacccagatcactcagtatctggctgaggccggctacacaaca
cgggggaagattggctgcactcagccccgtcgtgtagcggccatgtctgtggccaagaga
gtctctgaagagtacggttgctgtctgggccaggaggtggggtacactattcgatttgaa
gactgcaccagcccagagactgtcatcaagtacatgacagacggtatgctgttgagggag
tgtctcatcgacccagatttgggccagtatgccatcatcatgttggacgaggcccacgag
aggaccatccacactgacgtgctcttcggcctgctgaagaagacggtgatgaagcgcaaa
gacatgaagctcattgtgacttcagcaacactggacgccgtgaagttctcccagtacttc
tacgaagcacccatcttcaccatccctggcagaacctacccagtggaggttctctacacc
aaagagcccgagacggactacctggatgccagcctcatcacggtcatgcagatacacctg
actgagccccctggcgatgtcctggtgttcttgacgggtcaggaagagatcgacacggcc
tgtgagatcctgtacgagaggatgaagtcgctggggcctgatgtaccagagctgatcatc
ctacctgtctactcagccctgcccagtgagatgcagacccggatctttgatcctgcacct
cctggaagcagaaaggtggtcattgccactaacattgccgagacgtctctgaccattgac
ggtatctactacgtggtggaccctggctttgtgaagcaaaaggtgtacaactccaagaca
ggcatcgatcagctggtggtgacccccatctcacaggcccaagccaaacagcgtgctggc
agagctggaagaacaggcccaggaaagacctacaggctgtacactgagagagcctacaga
gatgagatgctcaccaccaacgtccctgagatccagaggaccaacttggccagcactgtg
ctctccctcaaggctatgggcatcaacgacctgctgtcgtttgacttcatggacgctcct
cccatggagaccctgatcacagccatggagcagctgtacaccctgggagctctggacgat
gagggcttactcacacgcctggggagaaggatggctgagtttcctctggagcccatgctg
tgtaagatgctgatcatgtctgtccacctgggctgcagtgaggagatgctcaccattgtc
tccatgctgtctgtgcagaacgtcttctacaggcccaaggacaagcaagccttggctgac
cagaagaaggccaagttccatcagcctgagggagaccatctgaccctgctggcggtgtat
aactcctggaagaacaacaagttctccaacccctggtgctatgagaactttatccaagcc
cgctccctgcgccgtgctcaggacatccgcaaacagatgctgggtatcatggacagacac
aagctggacgttgtgtcttgtgggaaagctacagtgcgggtccagaaggccatctgcagt
gggttcttccggaacgcggccaagaaggatcctcaggagggctaccgtaccctcatcgat
caacaggtggtgtacatccacccttccagtgccctgtttaaccgtcagcctgagtgggtg
gtgtaccacgagctggtgctgaccaccaaggagtacatgagggaggtgaccaccatcgac
cctcgctggctggtggagttctcaccagccttcttcaaggtgtccgaccccacacgcctc
agcaagcagaagaagcaacagcgcctggagcccctgtacaaccgctacgaggagcccaac
gcttggaggatctctcgggccttcagaaggcgttaa
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