Osmerus eperlanus (European smelt): 134032112
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Entry
134032112 CDS
T10927
Symbol
abca1b
Name
(RefSeq) phospholipid-transporting ATPase ABCA1b
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep02010
ABC transporters
oep04148
Efferocytosis
Brite
Transporters [BR:
oep02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
134032112 (abca1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
134032112
NCBI-ProteinID:
XP_062331923
LinkDB
All DBs
Position
13:15445109..15480545
Genome browser
AA seq
2296 aa
AA seq
DB search
MSISTQLGLLLWKNFTYRRRQTLQLLVEIVWPLFIFFILIGVRMHYPPYEQHECHFPNKA
MPSAGTLPWIQGIICNANNPCFRYPTPGETPGVVGNFNDSIISRLFSDAKKILLYSQNDR
SLEGFKDLAQALRVLQANTSGFKLKDFLHEEETLSSFLAHNASFSDYTVREIVDADVNLE
KVLLKGFGVHLKDMCDSSGSSLLEDFVTIGDRRVSSLVQEMICRSPGSWLDQAEKHFLNN
LDFLKPLKKDVKADPKAVKQVATATDKLLESLGSLAVELAGMKSWSDLRNEIIFLTQNAT
SSPSTMYKAVSRIVCGHPEGGGLKIKSLNWYEDSNYKMLFGNHNTSEDDADTHYDNSSTP
YCNSIMRNMESNPIYKMMWQALKPLLMGQILYTPHTPATFKIIQEVNRTFQELGVFRHLG
GMWDEMRPKVWTFMESSEEMDFVRTLLKNNASASYFHAQLVGTSWTVDDLSSFLAKQSTD
PRPPGTAVTWRDVFNETDQAVTSISRFMECVNLDKLEPVANEERMVNKSLVLMEDRKFWA
GIVFSDIDTNSSELPAKVNYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDLRYIWGGFS
YLQDVIEHAIIRAVTGTKEKTGVYIQQMPYPCYVDDMFLRVMSRSMPLFMTLAWMYSVAI
IIKGVVYEKEARLKETMRIMGLNNGILWFSWFISSLIPLLVSAGLLVVLLKMGNLLPYSD
PGVVFLFLGSFAVVTIMQCFLISTAFVRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFG
GKVIASLLSPVAFGFGCEYFALFEEQGVGIQWNNLVSSPMEGDDYSLTTAIILMYFDSFL
YGVMTWYIESVFPGQYGIPRPWFFPFTKSYWFGEGDNRKTKVPQGRKGNRGAVCVEEEPA
HLEPGVYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPT
SGTAYILGRDIRSELSTIRQSLGVCPQHNVLFSMLTVEEHIWFYSRLKGLSEEQVKGEMD
QSLKDMGMSHKRCSRSSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDL
LLNYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLKNQLGTGYYLTLVKKD
PEPSLSSCRNSSSTVSFTKKEEECASVSSSDAGLGSEHESEAATIENGHAASISEGPFVP
PDVPLISSLIFKHVHAARLVEDLGHELTYILPYGAAKDGAFVELFKDLDKHLSALGISSY
GVSDTTLEEIFLKVAEDNGVDTEVPSDGTLPVRRRRRHAFGGDHQSCLKPLTEDDDNKDD
NDSEADPEPKETDLLGCFDGTGSYQVTGWSLKKQQFVALMWKRFLYARRSRKGFFAQIVL
PAVFVCIALVFSLIVPPFGKYPSLELQPWMYEEQVTFISDDAPQDVNMQALLRALTDSPA
FGTRCMEGETIPDAPCTMGDEDWSAPEVPESVRGLFSSGNWTMENPSPPCFCTCNGQKKM
LPECPAGAGGLPPPQIKISATDTLLNLTGRNISDYLVKTYAQIIGKSLKNKIWVNEFRYG
GFSFGARSTQVLPPADEIDDAIDRVRKIFELQKGAAADRFLDGLSGFINGMDTKNNVKIW
FNNKGWHSIGSFINVMNNGILRANLPEGQDPNKYGISAFNHPLNLTKEQLSQVALMTTSV
DVLVSICVIFAMSFVPASFVVFLIQERVSKAKHMQFINGVQPLLYWCANFIWDMCNYVVP
ATLVIIIFISFQQKAYVSSNNLPALALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSV
NILIGINGSISTFVMELFGDKEIGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMADALE
RFGENRLRSPLEWDMVGKNLFAMAVEGAVFFIITVLIQYRFFIKAKPTSTLTKLGPIGEE
DEDVARERQRVVHGLGHGDILELRQLTKVYKRKQKPAVDRLCVGIPPGECFGLLGVNGAG
KTTTFKMLTGDSLVTSGEAFLARKSILREIDEVHRNMGYCPQFDAINDLLTGREHLEFYA
ILRGVPEDEVCEVAEWGIRKLGLVKYVDKSAGSYSGGNMRKLSTAMALIGRPPVVFLDEP
TTGMDPKARRALWNCILSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHL
KNRFGDGYTIILRVAGPDPDLMPVRKFIESELPGSILKEKHRNMLQYQLPSSLTSLAHIF
SILAKNKGLLSIEDYSVSQTTLDQVFVNFAKDQSDDYHSKDSSVKRKDMAVDMSVLEQPS
TSSRAAEEEPNTDSSV
NT seq
6891 nt
NT seq
+upstream
nt +downstream
nt
atgtccatctcaactcagctgggcttgctgttgtggaagaactttacctacagaagaaga
caaacgcttcagctgctggtcgagatagtatggcctctgtttatcttcttcatattgatt
ggggtgaggatgcactaccccccgtatgagcaacatgaatgtcatttccccaacaaggcc
atgccctctgcgggcaccctgccctggatccagggcatcatctgcaatgccaacaacccc
tgcttccgctacccgacccctggggagactcccggggtggtgggcaacttcaacgactct
atcatttctcggctgttttcagatgctaagaagatcttgctgtacagtcagaatgaccgg
agtctggagggattcaaagacctggcccaggccctgagggtactgcaggccaacacctcc
ggtttcaaactgaaggacttcctccatgaagaggaaaccctgtcctcgttcctggctcac
aacgcctccttctcagactacacggtgcgggagatcgtggatgccgacgtgaacctggag
aaggtgctgttgaagggctttggggtgcacctgaaggacatgtgtgacagcagcggcagc
agtctcctggaggattttgtgaccatcggggaccgcagggtgtccagcctggtccaggag
atgatctgcaggtcccctggttcctggctcgaccaggccgagaaacatttcctcaacaac
ctggacttcctcaagcccctgaagaaagacgtgaaggcggaccccaaagcagtcaagcag
gtcgccacggctacggacaagctcctggagagcctgggttctctggcagtggagttggcc
ggcatgaagagctggagcgacctgcgtaacgagatcatcttcctgacgcagaacgccacc
tcgtcgcccagcaccatgtacaaggccgtgtctcgcatcgtctgtggacaccccgagggg
ggcgggctgaagatcaagtccctcaactggtacgaggacagcaactacaagatgctgttc
gggaaccacaacaccagcgaggacgatgccgacacacactacgacaactcctccacgccg
tactgcaacagcatcatgaggaacatggagtccaaccccatctacaagatgatgtggcag
gccctgaagcccctgctcatgggccagatcctctacacccctcacacccccgctaccttc
aagatcatacaagaggtgaacagaaccttccaggagctgggtgtgttcaggcacctgggg
ggcatgtgggatgaaatgagacccaaggtgtggaccttcatggagagcagcgaggagatg
gacttcgtcaggaccttgctgaagaacaacgcctctgccagctacttccatgctcagctg
gtgggcacgtcatggactgtggatgatctctccagcttcctggccaagcagtcgacagac
cctcggccccccggcacggccgtcacttggagggatgtgttcaacgagactgaccaggcc
gtcaccagcatctcccgcttcatggagtgtgtgaacttggacaagctggagcccgtggcc
aatgaggagaggatggtcaacaagtctctggttctcatggaggacaggaagttctgggcg
gggatcgtgttttctgacatcgataccaacagctcggagcttcctgccaaggtcaactac
aagatccgcatggacatcgacaacgtggagcgcaccaataagatcaaagacgcgtactgg
gacccgggccccagggccgaccccttcgaggacctgcgctacatctgggggggcttctcc
tacctgcaggacgtcatcgagcacgccatcatcagagccgtgacgggcaccaaggagaag
acaggggtctacatccaacaaatgccttacccctgctacgtagacgacatgttcctgcgg
gtgatgagccgctccatgcctctgttcatgacgctggcgtggatgtactcggtggccatc
atcatcaagggcgtggtctacgagaaggaggcgcgcctcaaggagaccatgaggatcatg
ggattgaacaacggcatcctgtggttcagctggttcatcagcagcctgatccccctgctg
gtcagcgccgggctgctggtggtgctgcttaagatgggtaaccttctcccctatagcgac
ccaggcgtggtgttcctgttcctgggctcgttcgccgtggtaaccatcatgcagtgcttc
ctgatcagcacggcgtttgtgcgggccaacctggcggcggcgtgcgggggcatcatctac
ttcacgctgtacctgccctacgtgctgtgtgtggcctggcaggactacgtgggcttcggg
ggcaaggtcatcgctagcctgctgtctccggtggcgttcggcttcggctgcgagtacttt
gccctgttcgaggagcagggggtgggcatccagtggaacaacctggtgtccagccccatg
gagggggatgactacagcctcaccaccgccatcatcctcatgtacttcgactccttcctc
tacggagtcatgacctggtacatcgagtcggttttccccggtcagtatggcattccccgt
ccctggttcttccctttcactaagtcctactggtttggagaaggagacaacaggaagacc
aaagttcctcagggtcggaagggaaatcgtggagctgtgtgtgtggaggaggaaccagcc
cacctggagccgggggtgtacatagagaacctggtgaaggtgtaccgccacggaaagaag
ctagcggtggacggcctgacgctgggcttctacgagggccagatcacctccttcctgggc
cacaacggagccgggaaaaccaccaccatgtctattttgaccggcctgttcccgcctacc
tccggcacagcctacatcctggggagagacatccggtcggagctgagcaccatcagacag
agcctgggggtgtgccctcagcacaacgtgctcttcagcatgctgactgtggaggagcac
atctggttctactcgcgtctgaaggggctgtctgaggagcaggtgaagggggagatggac
cagtccctcaaggacatgggcatgtctcacaagcgctgctcccggagcagcaccctgtcg
gggggcatgcagaggaagctgtccgtggcactggccttcgtgggggggtcgaaggtcgtg
atcctggacgagcccaccgctggagtcgacccctacgctcgcaggggcatctgggacctc
ctgctcaactatcgccaaggccgcaccatcatcctctccacccaccacatggatgaggcg
gacatcttgggcgaccgcatcgccatcatctcccacgggaagctgtgctgcgtgggctcc
tccctgtacctgaagaaccagctggggacgggatattacctcaccctggtgaagaaggat
ccagaaccttccctcagctcctgcaggaactcctccagcactgtctccttcaccaagaag
gaggaggagtgtgcctcggtcagcagctccgacgcgggcctcggcagcgagcacgaaagc
gaggcggccaccatcgagaacggccatgctgcctccatcagcgaggggccgttcgtcccc
ccggacgtgcctctgatctccagcctgatcttcaagcacgtccacgccgcccgtctggtg
gaggacctgggccacgagctcacctacatcttgccctacggcgcggccaaggacggagcc
ttcgtggagctgttcaaggacctggacaagcacctatctgccctgggcatctccagctac
ggcgtctccgacaccacgctggaggagatcttcctgaaggtggcggaggataacggcgtg
gacacagaggtcccttcagacggaactctccctgttcgtcgtcggcggcgacacgccttc
gggggcgaccaccagagctgcctcaagccactgaccgaggacgacgacaacaaagacgac
aacgactctgaagcagaccccgagcccaaagagacggacttgctgggttgttttgacggt
acgggctcgtaccaggtgacgggctggagtctgaagaaacagcagtttgttgccctgatg
tggaagcgcttcctgtacgctcgtcgctcccgaaaaggcttcttcgctcagattgtgctc
cctgctgtgttcgtgtgcatcgccctggtgttcagcctgatcgtgcctccctttgggaag
taccccagcctggagctgcagccctggatgtacgaggagcaggtcaccttcatcagtgac
gatgccccccaggacgtgaacatgcaggccctgctcagagccctgacggacagccctgca
tttggaacccgctgcatggaaggagaaactatacctgatgctccgtgtacgatgggcgat
gaggactggtcggcccccgaggttccagagagcgtccggggcctcttcagctcggggaac
tggaccatggagaacccgtcgcccccctgcttctgcacctgcaacggccagaaaaagatg
cttccggaatgtccagcaggagctggcggcctgccgcccccccagattaaaatcagcgcc
actgacaccctgctcaacctgactggaagaaacatctcagattaccttgtgaagacttat
gctcagattattgggaaaagtctgaagaacaagatctgggtcaacgaatttaggtatgga
ggattctcgttcggtgcccgcagcacgcaggtgctgccccctgctgacgagattgacgac
gccatcgatcgagtccggaagatcttcgaactacaaaagggagctgcagcagatcgattc
cttgacggtttgtctggcttcatcaacggtatggacaccaagaacaacgtcaagatctgg
ttcaacaacaagggctggcacagcatcggaagcttcatcaacgtcatgaacaacgggatc
ctgcgcgccaacctgcccgagggtcaagaccccaacaagtacggcatctctgccttcaac
catcccctcaacctcaccaaggagcagctctcccaggtggcactgatgaccacctcagta
gacgtgctggtgtccatctgtgtgatcttcgccatgtccttcgtgccggccagcttcgtg
gtgttcctcatccaggagagagtgagcaaggccaagcacatgcagttcatcaacggtgtt
cagcccctcctctactggtgtgccaacttcatctgggacatgtgtaactacgtggtcccg
gccaccctcgtcatcatcatcttcatcagcttccagcagaaggcctacgtgtcgtccaac
aaccttcctgctctggccctgctgctgctcctctacgggtggtccatcacccccctgatg
tacccggcctccttcttcttcaagatccccagcacggcctacgtggttctcaccagcgtc
aacatcctcatcggcatcaacggctccatctccaccttcgtcatggagctgtttggagac
aaggagatcggaggcatcaacgacatcctgaagaacgtcttcctgatcttccctcacttc
tgcctgggccgcggcctcatcgacatggtgaagaaccaggccatggccgacgcgttggag
aggttcggggagaaccgtctgcgctcccctctggagtgggacatggtggggaagaacctg
ttcgccatggctgtggagggagccgtgttcttcatcatcaccgtcctcatccagtaccgc
ttcttcatcaaggccaagcccaccagcaccctgaccaagctggggccgatcggggaggag
gacgaggacgtggcacgggagaggcagagggtcgttcacggcctcggccacggagacatc
ctggagctccgccagctcaccaaggtctacaagaggaaacagaagccggctgtggaccgc
ctgtgtgtgggcatcccccctggagagtgctttggtctgctgggtgtgaacggagcagga
aagacgaccaccttcaagatgctgacaggagactccctggtcaccagcggagaggccttc
ctggccaggaagagtattctgagagagatagatgaggtgcacaggaacatgggctactgc
ccccagtttgacgccatcaacgaccttctgacgggacgagagcacctggagttctacgcc
atcctccggggcgtgccggaggatgaagtctgtgaggtggcagagtggggcatccgtaaa
ctggggctggtgaagtatgtggacaagtcagcaggaagctacagcggaggaaacatgagg
aagctgtccacagccatggctctgattggtcgacctcctgtcgtcttcctggacgagccc
accactggcatggaccccaaggccaggagggctctgtggaactgcatcctcagcgtgatc
aaggagggccgctccgtggtgctcacctcacacagcatggaggaatgtgaggcgctctgc
accagaatggccatcatggtgaacggcaggttccgctgcctgggcagcgtgcagcacctg
aagaaccggttcggagacggctacaccatcatcctgcgcgtggccgggcccgacccagac
ctgatgcccgtcaggaagttcatcgagagcgagctcccaggcagcatcctgaaggagaag
caccggaacatgctgcagtaccagctgccctcctccctcacttccctcgctcacatcttc
tccatcctggccaagaacaagggcctgctgagcatagaggactactctgtgtctcagacc
acgctggaccaggtgtttgtgaactttgccaaggaccagagtgacgactatcactcgaag
gacagctcggtgaagcgcaaagacatggcagtggacatgtctgtcctggagcagccttct
acctcgagcagagctgctgaggaggagccaaatactgacagctcggtgtga
DBGET
integrated database retrieval system
