Osmerus eperlanus (European smelt): 134032119
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Entry
134032119 CDS
T10927
Symbol
pcdh1b
Name
(RefSeq) protocadherin-1
KO
K16498
protocadherin delta 1
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
134032119 (pcdh1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
oep01009
]
134032119 (pcdh1b)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
oep04515
]
134032119 (pcdh1b)
Protein phosphatases and associated proteins [BR:
oep01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
134032119 (pcdh1b)
Cell adhesion molecules [BR:
oep04515
]
Cadherins
Protocadherins
134032119 (pcdh1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
SGBP_BT4661-like
PepSY
PDGLE
NnrU
Sema4F_C
Motif
Other DBs
NCBI-GeneID:
134032119
NCBI-ProteinID:
XP_062331938
LinkDB
All DBs
Position
13:17608881..17624827
Genome browser
AA seq
1035 aa
AA seq
DB search
MWGGVMAWRRGLALGRGLALGRGLALGLVAVLLGSCGAAPTDILYRVPEEQPPNTLIGSL
ASDEGLPDTGHLYKLEVGTPFLRVDGKTGDIYTTEIPIDRETLRDCRNLFEGDKCFLEFE
VSITDLIKGQGPRLIEGRIEVQDVNDNTPQFASPILTLSIPENTHIGALFSIPMASDRDS
GRNGVAEYSLSAGPDADQLFSLQVAEDTDERLPQLIVMGNLDREQKDSYDLNIRVVDGGV
PPRASSALLRVTVTDQNDNAPKFERSHYEGELPENSPLGHSVLQVKANDADMGNNGEIDY
SLHQASETVQRLLRIDRSTGIIYVKGLVDREEENFLKFSVVAKDRGPNSKNSKVLVTLNV
KDQNDNAPAIEIRGIGLVTHHDGVANISEDMPIGTPVALVQVSDRDEGENAVVTCVVAGD
VPFQLRPASESANDRKRKYFLQTTTLLDYERIKDYRIEIVAVDSGNPALSSTNSLKVQVT
DMNDNAPVFSPTVFEVEFAEENQPGDKVLDVIATDADSGSNAELTYSIMMDSATKGLFQI
DPNTGEVRVRNQLDREHRERYEFHVAASDKGVPSLRGTATVVVKVLDRNDNDPKFMLSGY
SFSVLENMPPLSPVGMVTVIDADKGENARVHLSVEPDNGKFIIQNGTGTILSSISFDREK
ECTYTFRLKAVDAGDPPRSSYVGVTINVLDENDNAPYVTKPSNSTYKYLPPVTAPDTVVE
VVEAEDMDTGPNADLLYSITGGNPHGLFHISPTGGEIILAQEFTRKHNGLHRLVVKVSDK
GKPPRHTTALVHIFVNETIGNVTLIESLVGHSLYTPLDRDIAGDPNYALAQRSNIVYGSL
AGVAGVILVIVAVVVIRHRLQKDTKSGYQAGKKESKDLYAPKQGPKSSKGKKNKKGKAPK
PAKPLEEDEEASLQKGLKFNLINDNVNDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQL
QPQSPSASKKHQAVQELPATNTFVGTGDNTSTGSDQYSDYSYKANLPKYSSKQVGDYFAN
TTGYNRNIMWTNEVW
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgtggggcggagtgatggcgtggaggcggggcttggcgttggggcggggcttggcgttg
gggcggggcttggcgttggggctggtcgctgtgctgctagggagttgcggcgcagctccg
acagacatcctctaccgggtccctgaggagcagcctcccaacacgctgatcggcagcctg
gcctcagacgagggcctcccagacacgggtcacctgtacaagctggaggtcggcacccca
ttcctgcgagtggacggcaagacgggcgacatctacaccacggagatccccatcgaccgc
gagaccctgagggactgcaggaacctgtttgagggtgacaagtgcttcctggagttcgag
gtgtccatcaccgacctcatcaagggccagggccccaggctgatcgagggccgcatcgag
gtgcaggacgtgaacgacaacacgccgcagttcgcctcccccatcctcacgctgtccatc
ccggagaacacgcacatcggagcgctgttctccatccccatggccagcgacagggactcc
ggaaggaacggcgtggccgagtactcgctgagcgccgggccggacgccgaccagctgttc
agcctgcaggtggccgaggacacggacgagaggctgccgcagctcatcgtcatgggcaac
ctggaccgcgagcagaaggactcgtacgacctcaacatccgcgtggtggacgggggcgtg
cctccgcgggccagcagtgctctgctgagggtcaccgtcactgaccagaacgacaacgct
cccaagttcgagaggagccactacgagggggagctgccagaaaacagcccgctgggacac
tctgtactccaggtgaaggccaatgacgctgacatgggcaacaacggagagatcgactac
agcctccaccaggcgtccgagaccgttcagaggcttctgcgcatcgaccgctccactggc
atcatctacgtcaagggtctggtggaccgcgaggaggaaaacttcctcaagttctctgtg
gtggccaaggaccgcgggcccaactccaagaactccaaggtactggtgaccctgaacgtc
aaggaccagaacgacaacgcccccgccatcgagatccggggtattggcctggtgacgcac
cacgacggcgtggccaacatctctgaagacatgcccattggcaccccggtggcgctcgtc
caggtgtcggaccgtgacgagggcgagaacgccgtggtgacctgcgtggtggctggtgac
gtccccttccagctccgccccgccagcgagtcggccaacgatcgcaagaggaagtacttc
ctgcagacgaccaccctgctggactacgagcgcatcaaggactacaggatcgagatcgta
gcggtggactctggcaaccctgccctctccagcaccaactccctgaaggtacaggtgacg
gacatgaacgacaacgcccccgtcttctccccaaccgtgttcgaggtggagtttgcagag
gagaaccagccgggagacaaagttctggatgtgatcgccacagatgcggacagtggctcc
aacgcagagctgacctacagcatcatgatggactctgccaccaaggggctgttccagatt
gaccccaacaccggagaggtgcgcgtgaggaaccagctggatcgggagcacagggaacgc
tacgagttccacgtggccgcctccgacaagggcgtccccagtctgaggggaaccgccacg
gtcgtggtcaaggttctggaccgtaacgacaacgaccccaagttcatgttgagtggctac
agcttctctgtgctggagaacatgccaccgctcagccctgtcggcatggtgacagtcatc
gacgcagacaagggggagaatgccagggtgcatctgtccgtcgaacccgacaacggcaag
ttcattattcaaaacggcacgggcaccatcctgtccagcatctccttcgaccgggagaag
gagtgcacctacaccttccgtctgaaggcggtggatgccggcgacccgccgcggtcctcc
tacgtgggcgtcaccatcaacgtcctggacgagaacgacaacgcaccctacgttaccaag
ccgtccaactccacctacaagtacctgcctcctgtcaccgcgccagacaccgtggtggaa
gtggtggaggccgaggacatggacaccggacccaatgccgatctgctctacagcatcaca
ggcggaaaccctcacggactgttccacatctccccaaccgggggggagatcatcctggcc
caggagttcacccgcaagcacaacggtctccaccgcctggtggtcaaggtgagcgacaaa
ggcaagccaccgcgccacaccaccgccctggtccacatcttcgtgaatgagaccatcggg
aatgtcaccctcatagagtccctggtgggccacagcctgtacaccccgctggacagggac
atcgccggcgaccccaactacgcactggcacagcgcagcaacattgtgtacggcagcctg
gcgggcgtggccggggtcatcctggtcatcgtggcggtggtggtcatcaggcaccgcctg
cagaaggacaccaagagcggctaccaggccggcaagaaggagagcaaagacctgtacgcc
cccaagcaggggcccaagagcagcaagggcaagaagaacaagaaggggaaagcccccaag
ccggccaagcccctggaggaggacgaggaggccagcctccagaagggcctcaagttcaac
ctcatcaatgacaatgtcaacgacagcccccggatccacctgcccctcaactacccccca
ggcagccctgacctgggcaggcactaccgctccaactcccccctgccctccatccagctg
cagccccagtctccctccgcctccaagaagcaccaggctgtccaggagctccctgccacc
aacacctttgtgggaactggcgacaacacctcgacaggctcggaccaatactcggattac
agctacaaggccaacctgccgaaatacagcagcaaacaggtaggagactactttgcaaac
accacagggtacaacaggaacatcatgtggaccaatgaggtgtggtag
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