Osmerus eperlanus (European smelt): 134032870
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Entry
134032870 CDS
T10927
Symbol
nxf1a
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03008
Ribosome biogenesis in eukaryotes
oep03013
Nucleocytoplasmic transport
oep03015
mRNA surveillance pathway
oep05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134032870 (nxf1a)
03015 mRNA surveillance pathway
134032870 (nxf1a)
03008 Ribosome biogenesis in eukaryotes
134032870 (nxf1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
134032870 (nxf1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oep03019
]
134032870 (nxf1a)
03009 Ribosome biogenesis [BR:
oep03009
]
134032870 (nxf1a)
Messenger RNA biogenesis [BR:
oep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
134032870 (nxf1a)
mRNA cycle factors
Stress granule specific factors
134032870 (nxf1a)
Ribosome biogenesis [BR:
oep03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
134032870 (nxf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_4
UBA_8
LRR_8
LRR_9
LRR_6
Motif
Other DBs
NCBI-GeneID:
134032870
NCBI-ProteinID:
XP_062332911
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All DBs
Position
13:11185391..11192273
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AA seq
561 aa
AA seq
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MPYLITQHLFFLSNPYGRPYRRGDGRFDRGGRGRGGGVECYRGFGRGGGGGGGGSGRNRS
WFKITVPHGKKYDKKWLLTALQNLCSIPFSAVQYHTDGNKVQFYVDDSATAKALHGCSHK
ITDNDGYKVIVHINACPPPSFVLTDLKPEDLEHLKQCMAKRFDGTQQALDLNNIRTDPDL
VSQNIEVILNRKTCMEAVVKIIEENIPELVCLNLSNNRLHKLDEVAELVSKAPNLKTLNL
SHNELKSERELDRLKGLKLVELWLDRNPLCDLFKDQASYISAIRERFPRLLKLDGNDLPP
PIGFDIETATTIPPCKGSCFGSDEIKGLILRFLQQYYSIYDSGDRQPLLDAYHDGASFSL
STPYSNQNPSRCSLGEYQKDSRNLKRLKDPSMRFRLLKHTRLNVVAFLNELPKTQHDTAS
FNVDVNTYTSMLLSFTVSGVFKEVDGKYRDSVRAFSRVFITVPAGNSGLCIVNDELFVRN
STTEEIRRAFVAPAPTPSSSPVPTLTAPQQEMLSAFSLKSGMNLEWSQKCLQDNEWDFNR
AAQIFTELKTDGKIPDVAFIK
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgccgtatttaataacacagcatttgtttttcctcagcaacccatatggacggccatat
cggagaggcgatggacggtttgacagaggtggaagaggaagaggaggtggagtcgagtgt
tacagaggctttgggagaggcgggggtggaggcgggggtggaagcggaaggaacagaagt
tggtttaaaattacggtgccccatggcaagaaatatgacaagaaatggctgctcactgcc
ctacagaacctgtgctccatacccttctctgctgtacagtaccacacggacggcaacaag
gtgcagttctatgtggacgactcagccactgctaaagctcttcacgggtgttcacacaag
atcacagacaatgacggttacaaggtgatagtgcatataaacgcctgccctcctccctct
tttgttctcaccgacctaaaaccagaagacctggaacacctgaagcaatgcatggccaag
cgttttgatggcacccaacaggcactggacttaaacaacatccgaaccgatccagacctg
gtgtctcagaacattgaggtgatcctcaatagaaagacctgtatggaggctgtggtcaaa
atcatcgaggaaaacatccctgagctggtgtgtctgaatctgagcaacaatcgtctacat
aaactggatgaagtggcagagctggtcagcaaagcaccaaacctgaagacactgaatctg
tctcacaatgagttgaagtctgagcgggaactagaccggttgaaagggttaaagttggtg
gagctgtggttggaccgtaaccccctgtgtgacctcttcaaggaccaggcctcctacatc
agtgccataagagagagattccccagactgctcaaactggatggtaatgaccttcccccg
ccaataggcttcgatatagagacggccaccacaatcccaccctgcaagggcagctgtttt
ggttctgatgaaatcaagggcctcatcttgcggttcctgcaacaatattacagcatctat
gactcgggggacagacaacctctcctagacgcctaccacgatggcgcctcattctctctg
agcacgccctattccaaccagaacccgtccaggtgcagtttgggagagtaccaaaaagac
agtaggaacctcaagagactgaaagatccctccatgcggttccgcctgctgaaacacacg
cgccttaatgtggtggcgtttcttaatgagcttccgaaaacccagcacgacactgcatct
ttcaacgtggatgtcaacacgtacacgagcatgttgttgtcgttcacagttagcggtgtg
ttcaaagaagttgatggtaaatatcgagactctgtcagggccttctctcgagtcttcatc
actgtgcctgccgggaactctggcttgtgcatagtgaacgatgagctttttgtgcgcaac
tccaccacggaggagatccggcgagcgttcgtagcccctgctcccaccccctccagtagt
cccgtgcccaccctcactgccccacagcaggagatgctctctgccttctccctcaagtct
ggcatgaatctggaatggtcccagaagtgtctacaggacaacgagtgggattttaacaga
gctgcacagatctttacagaacttaagactgatggaaagatcccagatgtcgctttcata
aagtga
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