Osmerus eperlanus (European smelt): 134033623
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Entry
134033623 CDS
T10927
Symbol
rc3h2
Name
(RefSeq) roquin-2
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
oep Osmerus eperlanus (European smelt)
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oep03000
]
134033623 (rc3h2)
04121 Ubiquitin system [BR:
oep04121
]
134033623 (rc3h2)
Transcription factors [BR:
oep03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
134033623 (rc3h2)
Ubiquitin system [BR:
oep04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
134033623 (rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-CCCH_4
zf-RING_UBOX
zf-RING_2
zf_CCCH_4
zf-CCCH_UNK
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
134033623
NCBI-ProteinID:
XP_062333841
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All DBs
Position
14:complement(6083847..6098258)
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AA seq
1112 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYHEFDNSSHQPISLGCSHTVCHTCLHKLHRKACPFDHTAITTD
IDLLPVNTALLQLVGAQVPEAQAVSLNSQGEVEHYEVCRVCVEDLAVYLKPISGGKGGVT
LSPSALSRPMQRKLVTLVNCQLVEEEGRVRAVRAGRSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLIHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLTSLRLHLELLANI
DHNPEAAAPSWEELESVMLAVKVVVQGLVEFIQNFSKKSHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHTQDELEKYRMRNKKILSVGRPCPLQQGLLGQGLSVEAGEVPASVG
GAKGPDARGSPVEGLLSHPTPHPQPQLVSRGTELMEDMKRSVPNGANGLIGHSRTSSGPT
DQKSVSPPRTPVSLSSSGSSPHVSGGRGECVSGLSKQGHFLFRGPPPHPQPHPPQSELYY
QEARPAYDTPPYQPSSNYYPSSLHPHKPCMTRFLRSSHVSESSLPPSLTSSYSQEPQQHP
SYPPPRERVGPYPPPQYGALPPSRGVYAPLYDSRRVWRPQLYHREDARSNSLPPEVLHTY
QPPLRERFNSLDSPYCSGGEHRAALHREPCGRVPLGYEDLFRRKQEQWGHQHGNCNRPSQ
SSPIFTVDFGTEHVEGGGGQCVGCRYRGEESLAHYSPWSCGAISSCISPFEPEHHNHAST
HSSCSKHSEVEGCGGGGGGCGGGGGGGGGQRWLHTLEPYRTLKEEDPIIPFGEGPIISKW
GAISRAARTGYHTTDPVQATASQAGARTTPINFRDYGPHLGHGDYRWSSRGSDSSSHSSF
LESDQLCVSELQGRRRSSSGEEKVCEELRQREFCQDRAQSEPDRDIELELSVLDMEDRDT
HNDKCEESLDLGAPPLQDPRLLAPPSMDRQPPQTDPPSPGRADPHLLKKMAFRKSLSPGG
LAMGKLVLRTGPPRLGDTTRPKAGGEMLLNRS
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgcaggcggcccagtggaccgagttcctgtcctgccccatctgctaccatgag
tttgacaacagcagccaccagcccatcagcctgggctgctcccacaccgtgtgccacacc
tgcctgcacaagctgcaccgcaaggcctgcccattcgaccacaccgccatcaccaccgac
atagacctgctgcctgtcaacactgccctgctgcagctggtcggggcgcaggtcccagaa
gcccaggccgtgtccctcaacagccagggggaggtggagcattacgaggtgtgcagggtg
tgtgtggaggacctggctgtctacctcaagcccatcagtggagggaaaggtggggtgacc
ctgagtccgagcgcgctcagtcggcccatgcagaggaagctggtgacgctggtgaactgt
cagctggtggaggaggaggggcgtgtccgggccgtgagggcgggccggtcgctaggggaa
cgcacggtgaccgaactcatcctgcagcaccagaacccacagcagctctctgccaacctg
tgggcagctgtccgggccaggggctgccagttcctggggcctgccatgcaggaggatgct
ctgaagctggttctgctagcgctggaggacggctcagccctgtcacggaaggttctggtt
ctgtttgtggtccagaaactggagccgcgcttccctcaggcctccaagaccagcataggt
cacgtggtgcagctcctctacagggcctcctgcttcaaggtgaccaagcgtgacgaggac
tcgtccctcatgcagctgaaggaggagttccggacgtacgaggcgctgcggcgggagcac
gacgcccagatcgtccacatcgccatggaggcgggcctgcgcatctcccccgagcagtgg
tcctccctgctctacggagacctcatccacaagtcccacatgcagtccatcatagacaag
ctccagtccccagaatcctttgcgaagagcgtccaggagctgaccatcgtgctgcagagg
acaggagaccccgccaacctgaccagcctgagactgcacctcgagcttttggccaacata
gatcacaacccagaagcggcagcgccatcgtgggaggagctagagagtgtgatgctggct
gtgaaagtggtggtccagggtctggtggagttcatccagaacttcagtaaaaagagccac
gagactccccagccccagcccaacagcaagtataagaccagtatgtgcagagacctacgc
cagcaggggggctgcccacggggaaccaactgtaccttcgcacacacacaggacgagctg
gagaagtacaggatgaggaataagaagatcctcagcgtgggtcgcccctgccccctgcag
caggggcttctgggtcaagggctgagtgtggaggcgggggaagtcccggcctcggtgggg
ggggcaaagggaccagatgcgcgggggtccccagtggaagggctactttcccaccccacc
ccccatcctcagccccagctggtctcgaggggaacagaactcatggaggacatgaagagg
tccgttcccaacggcgccaacgggctgattggacactccagaacctcctctggtccaact
gaccagaagtcagtctcccctcccaggacccctgtcagcctctcatcttcaggctcctcc
ccccacgtgtccgggggtcggggtgagtgcgtctctgggctttctaaacaagggcacttc
ctgttccggggaccgccccctcaccctcagccacaccctcctcagtcagaactctactac
caggaagcccgcccagcctatgacacgcctccctaccaaccatccagtaactactacccc
tcctctctgcaccctcacaagccatgcatgactcggttcctacgctccagccacgtgtcc
gagtcctccctgcccccctccctgacttcctcctactcccaagagccccagcagcacccc
tcctacccccctcctcgagagcgcgtcgggccctacccccctccccagtacggggccctg
ccccccagccgcggggtctacgcccccctgtacgacagccggagggtgtggcgtccccag
ctgtaccaccgcgaggacgccaggagcaactccctcccgcccgaggtgctgcacacttac
cagccccctctccgagagcgcttcaactccctggacagcccctactgctcagggggcgag
caccgcgcggcgctgcacagggagccctgtgggcgtgtccctctgggctacgaggacctc
ttcaggaggaagcaggagcagtgggggcatcagcatggcaactgcaacaggccgtcccag
tcctcccccatcttcactgtcgacttcggaacggagcatgtagaaggtggggggggtcag
tgtgtgggctgtcggtatcgaggagaggagagtctggcccactattcgccctggtcttgt
ggagccatcagcagctgcatcagcccctttgaacccgagcaccacaaccacgcctccacg
cactcctcctgctctaaacactctgaagtggaagggtgtggaggaggagggggagggtgt
ggaggaggaggaggagggggaggaggccagcgttggttgcatacgctggagccctatcgt
acgctgaaggaggaggaccccatcatacccttcggggaagggcctatcatctccaagtgg
ggcgccatctcccgcgcggcacggaccggctaccacaccaccgaccccgtccaggccacc
gcctcccaggccggtgcacgcaccacgcccatcaacttcagagactacggccctcacctg
ggccacggggactataggtggagctccagggggtccgactcctccagccactccagcttc
ctagagagcgatcagctgtgtgtgtcggagctgcaaggccggcggcggtcctccagtggc
gaggagaaggtgtgtgaagagttgcgtcagcgagagttctgccaggaccgggcccagagc
gaaccggacagggacatcgagctggagctgtctgtcctggatatggaggacagggacact
cacaatgacaagtgtgaggagtctttagacctgggagctccgccccttcaggacccccgc
ctcctggccccccccagcatggaccgccaacccccccagacagaccctccctcgcctggc
agagcagaccctcacctgctgaagaagatggccttcaggaagtcactgtccccggggggg
ctagccatggggaagctggttctgaggaccggaccccctcgcctgggtgacaccacccgc
cccaaggcggggggtgagatgctgctcaatcgaagttga
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