Osmerus eperlanus (European smelt): 134033729
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Entry
134033729 CDS
T10927
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03030
DNA replication
oep03410
Base excision repair
oep03420
Nucleotide excision repair
oep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
134033729 (rfc1)
03410 Base excision repair
134033729 (rfc1)
03420 Nucleotide excision repair
134033729 (rfc1)
03430 Mismatch repair
134033729 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oep03032
]
134033729 (rfc1)
03400 DNA repair and recombination proteins [BR:
oep03400
]
134033729 (rfc1)
DNA replication proteins [BR:
oep03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
134033729 (rfc1)
DNA repair and recombination proteins [BR:
oep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
134033729 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_22
AAA_5
AAA_7
PTCB-BRCT
RuvB_N
AAA_30
AAA_14
AAA_33
AAA_17
AAA_16
Rad17
AAA_18
nSTAND3
BRCT_2
RNA_helicase
NTPase_1
AAA_19
NPHP3_N
TIP49
Motif
Other DBs
NCBI-GeneID:
134033729
NCBI-ProteinID:
XP_062333992
LinkDB
All DBs
Position
14:18142600..18158540
Genome browser
AA seq
1129 aa
AA seq
DB search
MDIRRFFAPSKPAVHKPGPNFSALTNDDKKKKIKSVSPEEDVKKKKNITKRTSLKADKEH
LCDKKKKKRLLIESDSEEEKPERKTETFPPKKGPVQYISETDSDNDDFLSLKSSKPKENS
VAKPTKKKQTENTFLSPKETTKSPPKPTQTRVPVTPTSAPSLPRLTPTSVMDYFGSGGVQ
RSDRKLVASTKRKAVSQEELSDELLQQMDMEVEKQVHEDEQFAKTLAMLDEEPHAKKARK
HSGPHSSSPEKTRADSAHSSTSHSQSNGMGSHKEEVIGPSPKKVLPPKASSKLAMMKRKQ
EGGERREGVGNVKVTVTPKKEPVSPATTDRKATPKTGSVAGITTSTTLKSSPKKSESTSP
EDAEKRRGNSSAFRNYLNREGPRALGSKEIPQGADNCLEGCVFVLTGVLESLEREEAKRL
VERYGGKVTSNISRRTSYLVLGRDSGQAKTDKALSLGTQILDEDGLLDLIRTKPGKKSKY
EIAAESQGSTRVPLKASPAKSSLPGPSGPQTASPSKTARGFRRALGAGGTPPGRGSGPRR
GLEGQGGSPSSSPGSGSSSLADEGASLLWVDRYRPRSLKAVIGQQGEQSCANKLLRWLQN
WHRNHAGGGAKPAVRSGKFGSGKDDGSSFKAALLSGPPGVGKTTTAALVCEELGYSYVEM
NASCTRSKNSLKELIAESLNNTSIKNYYSGSAQTVSNKHVLIMDEVDGMAGNEDRGGIQE
MIGLIKQSKIPIICMCNDRNHQKIRSLANYCYDLRFQRPRLEQIKGAMMSIAFKEGIKIL
PPALNEIILASNQDIRQVLHNLSMWSSTHKTLSYDQARQDAQGARKDTRLGPFDVCRRVF
SSGGDTPSSLQDKSDLFFHDYSLAPLFVQENYPHVQPAAAGGNVQALLVLLSRTADSICD
GDLVDRQIRSRQTWSLLPTQAIYASVLPGELMRGYMSQFPSFPSWLGKHSSTSKHSRILH
ELTSHMSLKTLSSSETVNQDYMPYFRRMLLCPLQRQGAEGAGQAVQLMDQYHLIREDVDS
IMEISVWAGQTDPYAKLDPKVKAAFTRAYNREVHLTPYSLQPIKKGRHGGGGGDLQGAEP
DSQVPEEDEEEGLDADAMIKQKKAKPIKEPKKEKAGDSGKGKGKGKGRK
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atggacatccggcgattctttgcgccgagcaaacccgcggttcacaaacccggcccaaat
ttcagcgcgctcacaaacgacgacaaaaaaaagaaaattaaatcggtgtctccagaggaa
gacgtgaagaaaaagaaaaacatcaccaagagaaccagtctcaaggcagacaaggaacat
ctctgtgacaagaagaagaagaagagactgctcatagagtcagactccgaggaggagaag
ccagagaggaagacggagaccttccctcccaagaagggtccagtgcagtacatctcagag
actgattcggacaatgatgacttcctgtctctcaagtcctccaagcccaaggagaatagt
gtggccaaaccaacgaagaagaaacagactgaaaatacttttttgtcgcccaaggagaca
acaaagtctcctccaaaacctacccagaccagagtaccggtcacccccacctctgcccca
tccctgcccagactcacccccacctctgtgatggactactttggtagtggaggtgtgcag
cgctcagacaggaagctggtggccagtaccaaaaggaaggctgtatctcaggaggagttg
agtgatgagctgctacagcagatggacatggaggttgagaagcaggtccatgaggatgag
cagtttgctaaaacactggccatgttggatgaagaaccacatgccaagaaggctcgtaaa
cactctggtcctcattcctcttcacctgagaagaccagagcagactctgcccacagcagc
acttctcactcacagtccaatgggatgggcagccacaaggaggaagtgattggtccgtcc
cctaaaaaggtcctgcctcctaaagccagctccaaactggccatgatgaagaggaagcag
gagggaggggagaggagggagggagtggggaatgtcaaagtgaccgtcactcctaagaaa
gagcccgtcagccccgccaccacagacaggaaagccacacccaaaacaggaagtgttgcc
ggaataaccacatccaccacattaaaatcatctcccaagaaatcggagagcaccagtccg
gaagatgcagagaagaggagaggcaactcatcagccttccgaaactacctgaacagagag
gggcctagggctctgggctctaaggagataccccagggagcagataactgcctcgagggc
tgtgtgtttgtgctgaccggggtgctggagtccctggagcgtgaggaggccaagaggctg
gtggagcgctacggtgggaaggtgaccagcaacatcagcagaaggaccagctacctggtg
ctggggagagatagtgggcaggccaagaccgacaaggcgctgagtctgggaactcagatc
ctggacgaggacgggctgctggacctgatcagaaccaaaccaggaaagaagtccaagtac
gagatcgctgctgagagccaaggctccacaagggtccccctgaaggcctccccagccaag
agttccctccctggcccctctggcccccagactgccagcccctccaagactgccaggggc
ttcaggagggcactgggggctggggggaccccccctggccggggctcagggcccagaagg
gggctggaggggcaaggggggtctccttcctcatcccctggctctggttcttcctcattg
gctgacgagggagccagtctgctgtgggttgacaggtaccgcccccgctctctgaaggct
gtgattggtcagcagggggagcagagctgtgccaataagctgctgcgctggttgcagaac
tggcacaggaaccatgctgggggtggagccaagcctgcagtgaggtcaggtaagtttggc
tctgggaaggacgatggttcttccttcaaagctgctcttctctcaggaccccccggagtc
ggcaagacaaccacagctgccctggtgtgtgaggaactgggctacagctacgtagagatg
aacgccagctgcactcggagtaagaacagtctgaaagagctgatcgctgagtctctcaac
aacactagcatcaagaactactactcaggctcagctcagacggtgagtaataaacacgtc
ctcatcatggacgaggtggacggcatggctggtaacgaggacagaggagggatacaggag
atgattggtctgatcaagcagtcgaagatccccataatctgcatgtgcaacgaccgaaac
caccagaagatccgctcactggccaactactgctacgacctgcgcttccagagaccccgt
ctggagcagatcaagggagccatgatgtccattgccttcaaggagggcatcaagatcctg
ccccctgccctcaatgaaatcatcctggcgtccaatcaggacattcgacaggtgctacac
aacctcagcatgtggtcgtcgacccacaagacgctgtcgtacgaccaggcaaggcaagac
gcccaaggtgcacgcaaggacacccgcctgggcccttttgacgtgtgcaggagggtgttc
tcctccgggggcgacacacccagcagcctccaggacaagtcagacctgttcttccacgac
tactcgttggcccctctgttcgtccaggagaactacccccatgtccagcctgctgccgct
gggggcaacgtgcaggccctactggtgctgctcagtagaacagctgactccatctgtgat
ggcgacctggtggacagacagatccgctctcgacagacctggtctctgctgcccactcag
gcaatctatgcgagcgtgttgccgggggagctcatgcgaggctacatgtcccagttcccc
tccttccccagctggctgggaaaacactcgtccaccagcaagcactcccgaatcctgcac
gagctgacttcacacatgagcctcaagacactgagcagcagtgagacggtgaaccaggac
tacatgccgtactttcggaggatgctgctttgtcccctccagaggcagggtgctgaggga
gcgggccaggccgtccagctcatggaccaatatcaccttatcagggaggacgtggacagc
atcatggagatcagcgtctgggccggccagaccgatccctacgccaagctagaccccaag
gtaaaagctgccttcacgcgagcatacaaccgcgaggtgcacctgaccccatactccctg
cagccaatcaagaaggggcgtcatggaggaggggggggggacctgcagggggcggagcca
gacagccaggtgcctgaggaggatgaggaggaaggccttgatgcagatgccatgatcaaa
caaaagaaagctaagccgatcaaggagcccaagaaggagaaagcaggggattctgggaag
gggaaaggaaagggcaaaggcagaaagtaa
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