Osmerus eperlanus (European smelt): 134033968
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Entry
134033968 CDS
T10927
Symbol
pcdh10a
Name
(RefSeq) protocadherin-10a isoform X1
KO
K28836
protocadherin-10, delta 2
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
134033968 (pcdh10a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
oep04515
]
134033968 (pcdh10a)
Cell adhesion molecules [BR:
oep04515
]
Cadherins
Protocadherins
134033968 (pcdh10a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Ig_CLSTN
Cadherin_FAT4_N
Cadherin_CELSR2_9th
DUF4621
TMEM98_N
PSI_induc_2
Motif
Other DBs
NCBI-GeneID:
134033968
NCBI-ProteinID:
XP_062334238
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All DBs
Position
14:11999009..12011529
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AA seq
1044 aa
AA seq
DB search
MILLLILVSILDGALSQLHYSVPEEQEPGTVVGNLLEDLGLDITKLSSRRFQTVPSSRNP
YLEVNLENGALLVKEKIDREEICKQTTPCLLHLEVFLESPLELFRVEIEVLDINDNPPRF
PETDISVEISESAIPGTRFPVENAFDPDVGTNALNTYAITNNNYFYLDVQTQSDGNKFAE
LVLEKPLDREQQAVHRYVLTAVDGGIPQRTGTALLVVKVLDSNDNAPTFDQSVYTVNLRE
NSPMGTLVIQLNATDVDEGQNGEVVYSFSSHNAPRIKDLFNIDARTGRIEVAGEVDYEES
NTHQIYVQAKDLGPNAVPAHCKVLVKLVDVNDNTPEISFSTVTESVSEQDAPGTVIALFS
VTDRDSGENGLMTCEIQGDVPFKLKSSFKNYYTIVTDGPLDRENTDSYTITVVAKDKGLP
SLATSKSIKVHVSDENDNAPRFTQPVYAVYVTENNVPGAFIHAVSALDPDVGPNAVITFS
ILECDIQGMSVDTYVSINQDTGYLYALRSFDYEQLKEFSFMVQAKDSGNPELSSNATVDV
IIVDQNDNPPSVISPIGKNGTAKEHLPRSAEPGYLVTRIVAMDADDSENARLSYSILRGN
EMGMFRMDWRTGELRTARRVSTKRDPQGSYDLLIEIRDHGQPPLSSSASVSVILVDSVVE
GRSGDRGSTAKSKETSLDLTLILIIALGSVSFIFLLAMIVLAVRCQKDKKLNLYTCLLAG
ECCLCCSSCCSRQARGRKQKKLSKSDIMLVQSTNVTSGVGPVGQVPVEESGVGGVGGGFG
SHHHQNQNSYCYQVCLTPESAKTDLMFLKPCSPSRSTDTDHTNPCGAIVTGYSDQQPDII
SNGSILSNETKHQRAELSYLVDRPRRVNSSAFQEADIVSSKDSGHGDSEQGDSDHDATNR
GHSAGADLFSNCTEECKALGHSDRCWMPAFVPSDGRQGPDYRSNLHVPGMDSVPDTEVPA
LERVTAATDLPTSTSTTDRSFSTFGKEGQGSNHLHQSQYSTSTLERTEYDSLRGTLPYKP
TFLCEYQYDSSLEPYDFGLVQYRY
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgattttgttactaatcctggtctccatcctggacggagcgctttcccagctgcattac
tccgtcccggaggagcaggaaccggggaccgtggttggaaatttattggaggatttgggg
ttggacatcacaaaactttcctctcgccgtttccagactgtgcccagctcgaggaatccg
tacttggaagtgaatctggagaacggggcgctattagtcaaggagaaaatcgaccgcgag
gagatatgtaagcagaccactccgtgcctactgcatctggaagtgtttttggaaagtccg
ctggagctttttcgggtggagatcgaggttctggatatcaacgacaatcccccccgtttt
cccgagaccgatatttccgtggagatatcagagagtgccatccccggtacccgcttcccc
gtggagaacgcattcgatcctgacgtgggcacgaacgcgctcaatacatatgccataacg
aacaataactacttttacctggacgttcagacgcagagcgatggaaacaaattcgctgag
ctggtgctggaaaaaccattagaccgggagcagcaggcggtgcaccggtacgtactcacg
gccgtggatggagggataccacagcggactggcaccgctctcttagtggttaaagttctg
gattccaacgataacgcgcccacgtttgaccagtcagtatacacagtaaaccttcgggag
aattctcccatgggaacgctggtaattcagttaaacgccacggatgtagacgagggacag
aacggagaggtggtgtattccttcagcagtcacaacgcaccacggataaaggacctattc
aatatcgacgccagaactggacggatagaggtagctggagaggtggactatgaggagagc
aatacgcaccagatatacgttcaggcgaaggacctgggtccaaatgctgtccccgcgcac
tgtaaagtgctggtaaagctcgtggacgtaaatgacaacacaccggagatcagtttcagt
acggtgacggagtctgtgagcgagcaagatgccccgggcacagtgatagcgctcttcagc
gtcacggaccgggactctggtgaaaacggactgatgacctgcgaaatacaaggagatgtg
ccgttcaaacttaagtcgtcgtttaaaaattactacaccattgtcacggacggaccgtta
gacagggagaacacagactcatacacaatcactgtggtggccaaagataaggggctgccc
tcactcgctacgagcaagtccatcaaagtccatgtctcggacgagaacgacaacgcaccc
cggtttacgcagccggtttatgcagtgtacgtgacagagaataacgtacctggcgccttt
atccacgctgtgagcgctttggaccctgacgtagggccaaacgccgttattaccttctcc
atattggagtgtgacatccagggcatgtccgtggacacatacgtgtcaatcaatcaagac
actggctacctatacgctctgcgctcctttgactatgaacaactgaaggagtttagtttt
atggtccaagctaaagattccggaaaccccgagctctcctccaacgccacagtagacgtt
atcatcgtagaccagaatgacaacccgccctcggttatttccccaatcggtaaaaacgga
actgctaaagagcacctaccgcgctcggcagagcctggttacctggtgacacgcatcgtt
gccatggacgcggatgacagcgagaacgcacgactgtcctacagcatactacgggggaac
gagatgggtatgttccgtatggactggaggacgggggagctaaggactgccaggcgggtg
tccactaaacgggacccccagggctcctatgacctgttgatcgagataagagaccatggg
cagccacccctctcctcttcggcaagtgtgagcgtcatcctggtggatagcgtggttgaa
ggccgcagcggggacaggggctccactgccaagtccaaggagacctctcttgacctcacc
cttatcctcatcatcgccctgggctctgtctccttcatcttcctgctcgccatgattgtt
ttggccgtgcgctgtcagaaggacaaaaaactgaacctgtacacgtgcctcctcgcggga
gaatgctgtctgtgttgtagctcgtgctgcagccgccaggctcgcggacggaagcagaag
aagctgagcaagtcagacatcatgcttgtccaaagcaccaacgtgacgtcaggggtcggt
ccggttgggcaggtgcccgtggaggaatccggggtgggcggcgtgggcggcggatttggg
tcccatcaccaccagaaccagaattcatactgctatcaggtgtgtctgacaccagagtcc
gccaagacggatctaatgttcctgaaaccatgcagcccttctaggagcactgacaccgac
cacaccaacccgtgcggggcaattgtcacaggatacagtgaccagcaaccggacataatt
tctaatggcagcatcctctccaatgagacgaaacaccaacgggcagaactcagttacctg
gtcgacaggcctaggcgcgtgaacagttctgcattccaggaggcggacattgtcagttct
aaagatagcggacacggggacagcgaacaaggggacagtgaccacgacgccaccaaccgg
ggtcactcggccggcgccgacctcttctctaactgcacagaggagtgtaaagccctgggc
cactcggaccgctgctggatgcccgccttcgtgccctctgacgggcgccaggggcccgac
tatcgcagcaacctgcacgtgcccggcatggactccgtgcccgacaccgaggtaccggcg
ctcgagcgcgtcaccgccgccaccgacctccccacctccacctccaccaccgataggtca
ttctccaccttcggcaaggaaggtcaagggtcaaaccacctgcaccaatcacagtacagc
accagcacgctagagaggacagagtatgatagcctgagaggaaccctcccgtacaaaccc
accttcctctgtgagtatcagtatgacagctcgctagaaccatacgactttggcctagtt
cagtacagatactag
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