Osmerus eperlanus (European smelt): 134034104
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Entry
134034104 CDS
T10927
Symbol
ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
oep Osmerus eperlanus (European smelt)
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oep03041
]
134034104 (ythdc2)
Enzymes [BR:
oep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134034104 (ythdc2)
Spliceosome [BR:
oep03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
134034104 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
Ank_2
HA2_N
AAA_19
ATPase
Ank
nSTAND3
AAA_22
PhoH
AAA_7
Ank_3
AAA_30
AAA_16
SRP54
Ank_5
Motif
Other DBs
NCBI-GeneID:
134034104
NCBI-ProteinID:
XP_062334436
LinkDB
All DBs
Position
14:complement(1136547..1203321)
Genome browser
AA seq
1453 aa
AA seq
DB search
MSRPSTDSPKPAKCQTKQAGAPGRGKGLKDIRIDEEVKIAVSISLERFQYSDQNEMEFPS
SLSSTERAFIHRLAQSLGYVSKSRGKGSSRTLTIRKKEGSETAQSIMIFNFSHNSKHVVR
SLLQRFPITNKERIDLLPCTERGLSVAMETENSRDKNRTSGRLNNGIPQIPQRRARSELD
FFRCSLPVYERQEEIVQVIKDNRVVLVVGETGSGKTTQIPQFLLDDCSKNGIPCRIFCTQ
PRRLAAIAVAERVAAERGESIGQTIGYQIRLESRVSPKTLLTFCTSGVLLRTLMAGDATL
TTVTHVIVDEVHERDGLSDFLLTKMRDMLQKMPTLKLILSSAALDVDLFLRYFGSCPVIH
IKGRPFEVKELFLEDILRTTGYANKDMMKYKKEIQREEKQQTSLTEWCNVRGRGSRKKTH
REWSAGSSCFLHENDLLDDGGDGVFNQHNEKDTGSLDPWLLKEMDACISDIFLNQDADAF
VQLFNLILSENVSVDYMHSEKSATPLMVAASRGFISHVEQLLSMGASVNLKSSNGWTAQD
WAKHFDQFEAVDLLESHQSSLESGKLDELSLVQSASNELSAEDQELLKVYHHSFDDEKVD
LDIIMHLLHNICTSSDDGAVLIFLPGYDEIVGLRDRILYDDKRFVDHSQRYLVFTLHSNM
QTSDQKKVLKNTPVGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNHVTMLKM
VWISKASSLQRKGRAGRCRPGICFHLFSRLRFNNMLDYQVPQLLRMPLQELCLHTKLLAP
ITCTIAEFLSKAPEPPPILIVKNAVQMLKTIDAMDPWEDLTELGYHLADLPVEPHLGKMV
LCAVVLKCLDPILTIACTLAHRDPFVLPSQASQKRAAMLCRKRFTAATFSDHMALLRAFQ
AWQKARSDGWERSFCEKNFLSQATMEIIIGMRTQLLGQLRAIGFVRARGGGDIRDVNLNS
ENWAVVKAALVAGMYPNVIHVDRDTCSISGVKEKKVRFHPTSVLSQPQYKKIPPANGQVA
AIQALPTDWLIFDEMTRAHRIASIRCCSVVSPVTVAIFGGCAKLPSTALQDPTEQKDEVV
NESSDSEMEDHSTTTHLAQMKIDEWLNFKLDQEVAGLVFQLRQKWHGLFLRRIRSPSKPW
SQLDEATIRALVSVLGSEEQSAGLQQPTGIGQRPRPMSSDEPPQIPSWKNLNSRRNLAAG
DNPNLPNDLHLLPPQASNDRSSSRLSPAPVLFQTKPHTREKGPSLYSKRSSEDQSSTKST
DSISLPSPCNSPSSTSSGKCSKSPSPRPGSASLRYFIMKSSNLRNIEISQQRGIWSTTPS
NELKLNKAFMDSSQVFLIFSVQGSGHFQGYARMTSVIGQECCQDWGSTGLGGVFCVEWIC
KESLPFQCAHQILNPWNDNKKVQISRDGQELEPQSGGQLLHLWERLSGKTQQYLQHEVQL
QASSPDMTALHLN
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgtccgagtactgactcccccaaaccagctaagtgtcagaccaaacaagctggg
gcaccaggcaggggtaaagggctgaaagacattcgtattgatgaagaagttaagattgct
gtcagtatttctttggagaggtttcaatacagtgatcaaaatgaaatggagtttccctca
tccttgtccagcacggaacgggcttttattcatcgcttggcccaatccttgggatacgtc
tctaaaagccgagggaaaggatctagcaggaccctcactatcaggaaaaaggaaggctcg
gaaactgcccagtccatcatgatttttaacttttctcacaattcaaagcatgtggtgcgt
agcctcttgcagaggttccccatcaccaataaagagcgtatcgacctgctgccttgcaca
gagaggggcttgtcggtggcaatggagacggagaacagtcgtgacaaaaacaggactagc
ggacgcctcaacaatggcatcccccagataccccaaaggagggcgcgctctgagctggac
ttcttccgttgctcactacccgtgtatgagcgccaggaagagattgtccaggtcattaaa
gacaaccgtgtggtcttggtggtcggtgagacgggctctgggaaaaccacccagattccg
cagttccttttggatgactgcagtaagaacggaatcccctgtcggatattctgcacccag
cctaggcgtcttgcagccattgctgtagcagagagggtggcagcagagaggggagagagc
attggtcaaaccattggctaccagatccgtcttgaaagcagggtttctcccaagacattg
ctgaccttttgcaccagtggggtcctgctgaggaccctgatggctggagatgccacactt
accacagtcacacatgtcattgtagatgaggttcacgagcgggacggcctaagtgacttt
ctgttgaccaaaatgagggacatgctccagaaaatgcccaccctgaagctcatcctttcc
agcgctgccctggatgtggaccttttcctccgatactttggctcctgccctgtcatccac
atcaaaggacggccattcgaagtcaaggaactcttcctggaggacatcttgagaaccacc
ggttatgcaaacaaagacatgatgaaatacaagaaagaaattcagagggaagaaaaacag
cagacatctctgacagagtggtgtaatgtccgaggaagggggtcccgtaagaagacccat
agggagtggagtgcaggctcttcttgttttctccatgagaatgaccttctggacgatgga
ggggacggagtcttcaaccaacataatgagaaagacacagggtctttggacccctggctg
ctgaaggagatggacgcctgcatctcagacatctttctgaaccaggatgcagatgccttt
gttcagttgttcaacctcatcctcagcgagaacgtcagtgtggactacatgcacagcgag
aaaagcgccactcccctcatggtagcggcgagccgaggcttcatcagtcatgttgagcag
ctgctcagtatgggagccagcgtcaacctcaagtcttccaatggctggactgcacaggac
tgggccaagcatttcgatcagttcgaggctgtggatctacttgaatctcaccaatcatcc
ctggagtcagggaagctggacgagttatctctggtgcagtcagccagcaatgagcttagc
gcagaggaccaggaactgcttaaggtctaccaccacagttttgatgatgagaaggtggac
ctggacatcatcatgcacctgcttcacaacatctgcaccagctctgacgatggtgctgtt
ttaatcttccttcctggatatgatgagattgttggactgagggaccgcatcctctacgat
gataaacgattcgtagatcattctcaaaggtatctggtctttaccctccattctaacatg
cagacatcagaccagaagaaagtgttaaagaacactcccgttggcgttcgcaagattatt
ctgtccactaacattgcagagaccagtatcactgtaaatgatgtggtctttgtcattgac
tctggaaaagtgaaggagaagtcctttgacgccctgaaccacgtgaccatgctgaagatg
gtgtggatttccaaagccagctcactacagaggaagggcagagctggacgttgcagacca
ggaatctgcttccatctcttcagccgcctcaggtttaacaacatgctggattatcaggtc
ccccagctactgagaatgccgttgcaggagctgtgtctgcataccaagctgctggcccct
atcacctgtaccattgctgagttcctgtccaaagcacccgaacctccccctattctcata
gtaaaaaatgctgtgcagatgcttaagaccatcgatgccatggacccgtgggaggacctg
acggagctgggataccacctcgccgacctgcccgtggaaccccacctgggcaagatggtg
ctgtgtgccgtggtgcttaagtgcttggaccccatcctgaccatcgcctgcactctagca
caccgcgacccctttgtgctgccttcacaggcatcccagaagagggcagccatgctgtgc
cgcaagcgctttaccgcggcaacctttagcgaccacatggctctgctacgagccttccag
gcgtggcagaaggcccgcagtgatggctgggagagatccttctgtgagaaaaacttcctg
tcccaggccaccatggagatcatcataggcatgaggacccagctgctaggacagctcaga
gcaatagggtttgtgcgagcgcgtggtggcggagacatccgggatgtaaatctgaactct
gaaaactgggcagtggtaaaggcggccctggtggcagggatgtaccccaatgtgatccac
gtggaccgggatacctgctccatctctggggttaaggaaaagaaagtccgcttccaccca
acctctgttctcagccaaccacagtacaagaagatccccccggccaatggtcaggtggcc
gccatccaggcgctccccactgattggctcatctttgacgagatgacaagagcgcacagg
attgccagtatccgctgctgttctgtagtgtcacctgtcacagtagccatttttggaggc
tgcgccaagctacccagcaccgctttgcaagatcccactgaacaaaaagatgaggttgtg
aatgagagcagtgacagcgagatggaggaccactccaccaccacccacctggcccagatg
aagattgacgagtggctgaactttaaactggaccaagaggtagcaggcttggtgttccag
ctgagacagaagtggcatgggctgttcctcaggagaatccgctccccctccaagccatgg
tcccagctggatgaggcgaccatacgagccctggtgtcggtgcttggctcagaggagcag
tctgcaggcctgcagcagcccacaggtattggccagaggccccggccaatgtcttcagat
gagccgccccagatcccctcctggaaaaacctcaacagcaggaggaaccttgcagcaggg
gacaatcctaacctccccaacgacctccatctcctccccccacaagctagcaatgacagg
tcttcctccaggttatcccctgcccctgtcctcttccagaccaagccccacaccagagaa
aagggcccctccctatactccaaacgctcttcagaggaccaatcttccaccaagtctact
gactccatcagcctcccaagcccctgcaacagcccctcgtctacgtcatcaggaaagtgt
tccaagtccccctctccacggccaggcagtgcgtcactgcgctactttataatgaagagc
agcaatcttcgcaacattgagatctcccagcagagaggcatctggtccaccacaccgagc
aatgagctgaaactcaacaaagccttcatggactctagtcaggtcttcctcatcttctca
gtccagggctcaggacacttccagggttatgcacggatgacatcggtcatcggccaggag
tgctgtcaggactgggggtctacagggcttggtggggtcttctgtgtggagtggatctgc
aaggagagcctcccattccagtgtgcccaccagatcctcaacccctggaatgacaacaag
aaggtccagatcagcagggacggacaggagttggagccccagtcgggtggccagctactg
cacctatgggagagactctcagggaaaacacaacagtacctgcaacacgaggtacaacta
caggcctcatcaccagacatgacggcattacacctaaactga
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integrated database retrieval system
