Osmerus eperlanus (European smelt): 134035101
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Entry
134035101 CDS
T10927
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
134035101 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oep03032
]
134035101 (topbp1)
03400 DNA repair and recombination proteins [BR:
oep03400
]
134035101 (topbp1)
DNA replication proteins [BR:
oep03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
134035101 (topbp1)
DNA repair and recombination proteins [BR:
oep03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
134035101 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
BRCT_TopB1_SLF1
ECT2_BRCT0
Zn_Ribbon_Topo
Motif
Other DBs
NCBI-GeneID:
134035101
NCBI-ProteinID:
XP_062335900
LinkDB
All DBs
Position
15:complement(11845327..11855379)
Genome browser
AA seq
1541 aa
AA seq
DB search
MSKGDKEQYVVKFVETNGKKTGFAAKAYEAIMELQSEKYLKTIDEKTALQMDHNDKSLFV
FSNFFTPAFLHCKKLGCRVVSPLVVLYCLQQHRCVPKAEQPIHNMAMADVTISCTSLDKD
ARTDVMNLVQLMGGHFYRDLNVSVTHLVAGEVGSKKYLVAASLGKPILLPCWVRDCWEKS
QDSLFRYTELPDEEYRCPVLQGCTVCVTGLSTVERKEVQRLCQEHGGSYTGQLKMNECTH
LIVSEPSGPKYECARKWNVFCVSLHWLFDSIEKGFCQDESRYNVERSATAKSSKPQTSTP
TGASRKRDGELHHKEGPSLLGLSHISVNSSLTVNDTALTNATVSRLDLPDPLDTLDLSTC
PSDDLLDGCKIFLCGQPGKRLEKLRRLVSAAGGLRFNQPCDGLTHIVMGDVDAEATAFLD
KAMHRPHVVTVQWLLDSFSRGSLLPEESYFHPSCLPPAPPTLAMPAPRTPAPRPSSSSAA
PLAPSPPTPRHQRAEEDMLSQYLDDDPTLVEMPPPAAPEPEPWGPGRTSVAGAGAGAGAD
STMQEASEAGLFAGKRFLLVGFEPDAETELSSLLVDNAGKVLVGRTRAVADYAVVPLLGC
EVEATVEEVVTDTWLAMCVEQQCVLDLSSHPLFTPVPVLEGRSPLRDCVLSVSQFTGAER
ESLIELARHLGASVQDYFVRMANPRKGMLASTHLVLQTPEGSKYQAAQKWGLPAVTLHWV
LESARTGRRAEEGRFLVDLPPSPEREEESFVGGSQKTPMPPPQASPEIALLGLQSGKAIT
PLDLGRFQSKVFQSALDQLNPKMEASTPGQDGGVGSKRAPPQIETPLKLDTPSRFLSRDQ
LFRPSFNIKDALATLETPGGRSQAGERAETPLTDIVNRNRQVALVNSTRGHASSDLQALT
ASPQLNMGPEADAPEKDSPAAPLAGGVVVCVGKKLSKKQGELNAIAASLGADFRWSCDDT
VTHYIYQGRVGDNTREYRGVKERGLHVVSQHWLLACAEQQKHVSESLYPFTYNPKMSLTL
SQAPDCTQRSPPGAPLSLGRFLTEASDCRDGADPEHRDEGQPSTSHRLSDGEPDGHQVQE
NTEKTDLSETLEMRETLHRQLQAIMSATKLTTGRRSSARLTRLGSGGGDSRPHTPDRAGR
SGSLRTLEALRMSREAIMDLNTEPSQSEQIVWDDPTAREERARLADNMQWPGSPSQHSEP
LALPPAPPVASTDNHPQLRDSMTDSELVEMVACDVIEQQMGLGVKTLPVEEQILTPKAPS
LAFPLANPPMPPEPQQTEEEEEEGSGEKKPPRFQLSCLNPQERIDYCHLIEELGGVVLDK
QCFDPSCSHIIVGSPLRNEKYLAAMAAGKWILHRSYLEACRSVGHFIQEEAYEWGSSSIL
EALPSVTSQQRRLALAGLRWRRSLQHRTGTEGAFSGWTVMLNIDQNREAGFRRLLQSGGA
KVLPSASPALYSSTTHLFADFSMLKPGDFMVDLSEAASMGVQCLKAEYIADYLMQEPSPP
VELYFLPGASAQAPDPERGATPGRKRKASGDSSRLKKSRLK
NT seq
4626 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaggagacaaagagcaatacgtggtgaagtttgttgaaacaaatggcaaaaag
acgggctttgctgctaaggcctatgaggctatcatggagttgcagtcggagaaatatctg
aaaaccatagatgagaagactgccctgcagatggaccacaacgacaagtctctgtttgtc
tttagcaattttttcacgccggccttcctccactgcaagaagctgggctgtagagtggtg
agtcctctggtggtgctgtactgtctgcagcagcatagatgtgtccccaaagcagagcag
cccatccacaacatggccatggctgacgtcaccatctcctgcaccagtctggacaaggat
gccaggacggacgtgatgaacctggttcagctgatgggagggcacttctaccgggacctc
aacgtgtctgtgacccacctggtcgccggagaggttggcagcaagaagtacctggtggcg
gccagcctgggcaagcccatcctgctgccctgctgggtcagagactgctgggaaaagtcc
caggacagcctgttccggtacacagagctgccggatgaggagtaccgctgccccgtgctg
cagggctgcactgtgtgtgtgaccggcctctccaccgtggagcgcaaggaggtgcagcgc
ctctgccaggagcacggaggcagctacaccggccagctcaagatgaacgagtgcacacac
ctcatcgtcagcgagccctccggcccaaagtatgagtgtgcccggaagtggaacgtgttc
tgcgtgtctctccactggctgtttgacagcatagagaagggcttctgtcaggatgagagc
aggtacaatgtggagcgctcagccacagccaagtccagcaagccccagacctccaccccc
accggtgccagcaggaagagggacggtgagctgcaccacaaagagggtccatctcttctg
gggctgagccacatctctgtgaacagcagcctgacggtcaacgacacagccctcaccaac
gcgacggtgagccgcctggacctgccagaccccctggacaccctggacctcagcacctgc
ccttcagacgatctgctggacggctgcaagatcttcctgtgtggccagccagggaagagg
ctcgagaagctgagacggctggtcagtgctgccggaggcctgcgcttcaaccagccctgc
gacggcctcacacacatcgtcatgggagacgtggacgcagaggccacagccttccttgac
aaggccatgcacaggcctcatgtggtgacggtacagtggctactagacagcttctccaga
ggcagcctgctgcctgaggagtcctacttccacccctcctgtctgccacctgccccgccc
acgctggccatgcctgccccccgcacccctgccccccgccccagctcctcttcagctgcc
cccctggcccccagcccccccacccccaggcaccagagggcagaggaggacatgctctct
cagtacctggatgatgacccgacactggtggagatgccccccccagcagctccagaacca
gagccgtgggggcccggccggacctccgtggctggggctggggctggggctggggcagac
tctaccatgcaggaggccagtgaggccggcctgtttgctggaaagaggttccttctggtg
ggctttgagccggacgcagaaactgagctgtcctccctgttggtggacaacgcagggaag
gttctggtgggccgcacgcgggcagtggcagattatgctgtggtccccctgctgggctgt
gaggtggaggctacggtggaagaggttgtcacggatacctggctggctatgtgtgtggag
cagcagtgtgtgctggacctgtcctcccaccctctgttcaccccagtcccagtcctggag
gggcgctctcctctcagagactgtgtcctctctgtcagtcagttcactggagcagagagg
gagtccctgatcgagctggccaggcaccttggagccagtgtgcaggactactttgtgcgc
atggccaacccaaggaagggcatgctggccagcacccacctggttctccagacccccgag
ggctccaagtaccaggcggcccagaagtggggcctgcccgccgtcaccctgcactgggtc
ctggagtcagcccggacaggccggcgggctgaggagggccgcttcctggtggacctgccc
ccttcacccgagagagaggaggagagtttcgtggggggctcccagaagacccccatgccc
cctcctcaggcctcccctgagatcgccctgctgggtctgcagagcgggaaagccatcacc
cctctggacttgggccgcttccagagcaaggtgttccagtcagcattggaccagctgaac
cccaagatggaggccagcacccccggtcaggatgggggggtgggcagcaagagagccccc
cctcagatagagacccccctcaagctggacacgccctctcgctttctcagcagagaccag
ctcttcagaccctccttcaacatcaaggatgcgttggcgacgttggagaccccggggggg
cggtcccaggctggggagagggcggagacgcccctgacagacatagtcaacaggaaccgg
caggtggcgctggtgaacagcacccgtggccacgcctcctcagacctgcaggcgctcaca
gccagccctcagctcaacatggggcctgaggctgacgccccagagaaggactcccctgct
gctcccctggctgggggggtggtggtgtgtgtggggaagaaactgagcaagaagcaggga
gagctcaacgccatcgctgcctctctgggagcagacttcaggtggtcctgtgacgacact
gtgacacactacatctaccagggtcgagtaggagataacacacgagagtaccggggggtg
aaggagagagggctgcatgtggtctcccagcactggctcctggcttgtgctgagcagcag
aagcatgtgtctgagtccctctatcccttcacctacaaccccaagatgagcctgacgctc
agccaggccccagactgcacccagagatcccccccgggggcccccctctccctgggcagg
ttcctcacagaggcctcagactgcagggatggtgctgatcctgaacaccgtgatgaagga
cagccctccacctcccaccgcctcagtgatggagagcctgatggacatcaggtgcaggag
aacaccgagaagacagacctgtctgagactctggagatgagggagaccctgcacaggcag
ctgcaggccatcatgtcagccaccaagctgaccaccgggcggcgctcctccgccaggctg
accaggctgggctccggggggggcgactcccgcccccacactccggaccgggcggggcgc
agtgggagcctgcgcaccctggaggccctcaggatgagcagggaggccatcatggacctg
aacacggagccctcccagagcgagcagatcgtctgggacgaccccacggcccgcgaggag
agagccaggctggctgacaacatgcagtggcccggtagcccctctcagcactcagagccc
ctggccctgcccccggcgccgcccgtcgcctccacagacaaccacccccagctcagagac
tccatgacggactcagagctggtggaaatggtggcctgtgatgtcatagagcagcagatg
ggtctgggggtcaagactctcccagtggaggagcagatcctcactcctaaagcccccagt
ctggccttccccctcgctaacccccccatgccacctgaaccacagcagacagaggaggag
gaggaggaggggtcaggggagaagaagccccccaggttccagctgtcctgcctcaacccc
caggaacgcatcgactactgtcacctcatagaggagctgggtggggtggtcctagacaag
cagtgttttgaccccagctgttctcacatcatcgtggggagccccctgaggaatgagaag
tatctggcagccatggccgcaggaaagtggattctacatcgctcctacctggaggcctgc
cgctccgtaggacacttcatccaggaggaggcgtatgagtggggcagcagttccatactg
gaggctcttccctccgtcacctcccagcagaggaggttggcgctggctggcctgcgctgg
aggaggagcctgcaacaccgcactggcacagagggggcgttcagtggctggaccgtcatg
ctgaacatcgaccagaacagagaggctggattcagaagactgctgcagtctggaggagcc
aaggtgctgcccagtgcctccccagccctctacagcagcaccacacacctgtttgcagac
ttcagcatgctgaaaccaggagacttcatggtggacttgtccgaggcagcctccatggga
gtccagtgcctaaaggcagagtacatagcagactacctgatgcaggagccctctcctcct
gtagagctgtacttcctgcctggggcctctgcccaggccccggacccagagagaggagcc
actcccggccgcaagcgcaaggcatcaggagactcctccaggctcaagaagagccgcctc
aaatga
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integrated database retrieval system
