Osmerus eperlanus (European smelt): 134035984
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Entry
134035984 CDS
T10927
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
oep Osmerus eperlanus (European smelt)
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oep03000
]
134035984 (rc3h1b)
04121 Ubiquitin system [BR:
oep04121
]
134035984 (rc3h1b)
Transcription factors [BR:
oep03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
134035984 (rc3h1b)
Ubiquitin system [BR:
oep04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
134035984 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-C3HC4_3
zf-RING_2
zf-C3HC4_4
zf-C3HC4
zf-CCCH
zf-CCCH_4
Prok-RING_4
zf-CCCH_UNK
zf-C3HC4_2
zf_CCCH_4
NS3_helicase_C
FYVE
Baculo_IE-1
Motif
Other DBs
NCBI-GeneID:
134035984
NCBI-ProteinID:
XP_062336607
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All DBs
Position
16:complement(15617208..15631594)
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AA seq
1110 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEEAVRRPISLGCGHTVCKLCLNKLHRKACPFDQTAISSD
IEQLPANTALLQLVGAQVPKAQPVALISSSEDLQHYEEARQCVEELALYLKPLSNTRGVG
VSSAAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKDEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPSWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGSSLLPDDGLGMEVGVARKPSP
LANGSAPPLPQLIARGADPTSYDIMRKPLKLEGGGGSAPGSPPDSMNSGPKSGMLVSHPL
PPPRLPGEHLSGAKQGGGAPRGPQMYPPQQQLADMYYSDSRTPPSSTQYEASQYPSGYPY
QQPAPYPPRGYLRNPVPPSDPPGPPYPDPYPGYAPERTYPGPHAAPPFSYPPHYDSRSRH
APYPPAPPAAPQPYPSPRDDMVRMSPAPLEGPPSSGQAGGLYHPEGGGRERYPPEGYYPA
GAPPTAMRSYAREVYGRPQPSLDYLHRRRKELMAQLEERKIVSPPPFPVPSSLPHAFPSD
YPPEYGEESSKALGRSREQDYAGQYSPWSCDTIGSYIGSKDAKPKDHMTPVAMEMMSVEG
KGLEAPRRGAEGKDDDPIIPFGPQPTVSRFGAISRTSKTGYQGPPHALGPPHALGPPHAL
GPSGPKHMAAEYAYGNHGGWGGASYPAHQQVSSSQTHFPERMSLGPSDREQLKMELQQVN
QQITQQSQIHGLEAAGSSLLLQRESGQSPQQQWSAGAGGPGASSVSSQQLSLELHEVERE
IGKRTREIAMEGQVEVQYKLKTAENGGQPDHKTQLEEISLALGEVSNGSGGLGQETLLSL
SSKASSLSLCCEQGPAGAELQKNGLAHTCS
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtacaagcgccccagtggacagagttcctgctgtgccccatctgcacccagacg
tttgaggaggctgtgaggcgacccatcagcctgggctgtggacacaccgtgtgcaagctg
tgtctgaacaagctgcaccgcaaggcctgccccttcgaccagaccgctatcagctccgac
atcgagcagttacctgccaacaccgccctgctgcagctggtgggggcgcaggttcccaag
gcccagccggtagctctgatctccagctctgaggatctgcagcactatgaggaggccagg
cagtgtgtggaggaactggccctctacctcaaaccactcagcaacaccagaggcgtgggg
gtgagcagcgctgcccagagcatgctgagccggcccatgcagaggaagctggtgactctg
gtgcactgtcagctggtggaggaggagggccgggtgagggccatgcgggccgcccgctcc
ctgggggagcgcaccgtcaccgagctcatcctgcagcaccagaacccacagcagctctcc
tccaacctctgggctgccgtcagggcccgcggctgccagttcctggggccagccatgcaa
gaggaggctctgaagctggtgctgctggctctggaggacggctctgctctgtccagaaag
gttctggttctgtttgtggtccagaggctggagccacgcttcccccaggcctccaagacc
agcataggccacgtggtgcagctcctctacagggcctcctgcttcaaggtgacgaagcga
gacgaggactcgtccctgatgcagctgaaggatgagttccggacgtacgaggcgctgagg
cgggagcatgactcccagatcgtccagatcgccatggagggcggcctgcgcatcgccccc
gaccagtggtcctccctgctgtacggagaccagtcacacaagtcccacatgcagtccatc
atcgacaagctgcagaccccagcctcgttcgcccagagcgtgcaggagctgaccatcgct
ctgcagaggacaggagacccagccaacctcaacagactcagacctcacctggagctgctg
gccaacatagaccccagccctgacgcaccccccccctcttgggaacagctggagaagggt
ctggtggcggtgaagacggtggttcatggtctggtggacttcatccagaaccacagtaag
aagggagcagacccgcagcagcccccccagcacagcaagtataagacctacatgtgcaga
gacatgaagcagaagggaggctgtcccagaggagccagctgcaccttcgcacactcccag
gaggagctggagaagtaccgtaagatgaacaagcggctggcggctcgtctccctggctcc
tccctcctcccagatgacgggctggggatggaggtgggcgtggcccgcaaaccctcgcca
ctggccaacggctcggccccgcccctgccccagctcatcgcccgtggcgccgaccccacc
tcctatgacatcatgaggaaacccctgaagctggagggaggaggaggctccgcccctggg
tcgcctcctgactcgatgaactcgggtcccaagtcaggtatgctggtgtctcaccccctg
cccccccccaggctgccaggagagcacctgtcgggggccaagcagggtggcggggccccc
cggggcccccagatgtaccctcctcagcagcagctggctgacatgtactactcagactcc
agaactccaccttcctccactcagtacgaggcctcacagtacccctctggttacccctac
cagcagcccgccccctaccctccccggggctacctgcgtaaccctgtcccccccagtgac
ccccccggccccccctaccctgatccctaccccggctacgcccctgagcgcacgtacccc
ggcccccacgctgccccgcccttctcctatcccccccactacgactcccgctccaggcac
gccccgtacccccctgccccccccgccgcccctcagccctacccctccccccgggacgac
atggtgagaatgagccccgcccccctggaggggcccccctcctccggccaggcagggggg
ctgtaccatcccgagggcgggggccgggagaggtatccccctgaggggtactaccctgct
ggggccccgcccactgccatgaggagctacgctagggaggtgtacggacggccccagccc
agtctagactacctccatcgccgtcgtaaggagctgatggctcagctggaggagaggaag
atcgtctccccccctcccttccccgtcccctcctccctcccccacgccttcccctccgac
taccccccagagtatggggaggagagctccaaggcgttgggcaggtccagggagcaggac
tatgctggtcagtactctccctggtcatgtgacaccatcggctcttacatcggctccaag
gacgccaagcccaaagatcacatgacccctgttgccatggagatgatgagtgtggagggt
aagggccttgaggcccccaggaggggagcggaggggaaggatgacgaccccatcatcccg
ttcggcccccagcccaccgtgtctcgcttcggtgcgatctcacgtacctccaagacaggc
taccagggccccccgcatgccctagggcccccgcatgccctggggcccccgcatgccctg
gggcccagcgggcccaagcacatggctgcagagtacgcctatgggaaccatggaggatgg
ggcggagcctcttaccccgcccaccagcaggtctcctcctcccagactcacttccctgaa
cggatgtctctggggccttctgacagggagcagctgaagatggaactccagcaggtcaac
cagcagatcacacagcagtcccagatacacggcctggaggctgctggctcctccctgctc
ctccagagggagtccgggcagagcccccagcagcagtggtccgcgggggctggggggccc
ggggcctcctcagtgtccagccagcagctcagcctggagctgcatgaggtggagagagag
ataggcaagaggacccgggagatcgctatggagggccaggtggaggttcagtacaagctg
aagactgcagaaaatggaggacaacctgaccacaagactcagctcgaggagatctccctg
gccctgggggaggtgtctaacgggtctgggggtctgggccaggagaccctgctgtctctg
agcagcaaggcctcctccctcagcctctgctgtgagcagggccccgctggagcagagctg
cagaagaacggcctggcgcacacctgctcctag
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