Osmerus eperlanus (European smelt): 134036181
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Entry
134036181 CDS
T10927
Symbol
col6a1
Name
(RefSeq) collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04510
Focal adhesion
oep04512
ECM-receptor interaction
oep04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134036181 (col6a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134036181 (col6a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
134036181 (col6a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oep04147
]
134036181 (col6a1)
00536 Glycosaminoglycan binding proteins [BR:
oep00536
]
134036181 (col6a1)
Exosome [BR:
oep04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
134036181 (col6a1)
Glycosaminoglycan binding proteins [BR:
oep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134036181 (col6a1)
Hyaluronan
Extracellular matrix or blood plasma proteins
134036181 (col6a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
DUF1194
Motif
Other DBs
NCBI-GeneID:
134036181
NCBI-ProteinID:
XP_062336980
LinkDB
All DBs
Position
16:9040013..9054857
Genome browser
AA seq
1018 aa
AA seq
DB search
METLGVLLALLSVGALFSGARAQVRRPKFAECPVDLFFVLDTSESVALRVKPPNFYIDQI
KDFTKRFIDELQDMRHPCDRYLTWNSGALHYSDDIILVRHLSDISTERQALKDDVDTIKY
IGKGTHTDCAIKRGLAELLIGGSHYHENKYIVVVTDGHPITGYKEPCGGVQEAANEARQH
GVKVFAVAISPDQEDTRLSVIATDQHYRQNFTAADDSRTTKMRTIRTIIDMITNETKDVC
CSFDCNAQGGPKGPDGELGSKGEIGRQGMPGEKGDIGPAGNPGDPGPVGYRGMKGDRGER
GGKGDRGHKGYKGDKGHRGTDGVDGRKGDAGFSGLPGCKGSPGPDGTQGDPGPKGDPGSY
GAKGAKGDVGKDGELGRQGNDGPSGPKGDQGPQGPNGDKGERGDDGAPGPDGGRGDRGAA
GEKGEQGSRGNRGPKGDGGDPGPRGEPGREGSSGPNGDSGEPGRPGSPGYRGDEGQTGPE
GPKGPRGIKGAPGDRGLMGERGEDGSPGNGTEGCHGFQGYPGPRGDPGEPGGKGTPGPKG
DDGEAGESGLDNTRPGIPGPKGAKGHRGPEGNPGPPGPPGPPGVDECKIMDIIMKMCSCC
ECKCGPLDLAFIVDSSESIGSANFALAKDFIITVIDRLMKDQQVRFGFNDSRVGVVQYSG
SSAQEAVQLGDPNINNLVELKHAVRNLRWLAEATYTGEALQFSLDKLINQLKNKNRVVLV
LTDGRSDTKRDRVPLNTLCGKGIKVGGLGVKDNFGRQPNQEQLGEVVCTSDPTPGFSFVL
DNFAELLDDTFLQNLTARICEDKKCPKYKCDISFDEDTDVVVMMDSSASVGQRNFETSKT
FVRRLAKRFLTAEKRGRANVRVGVAQYSRTSRTEAELTSNLTVLNDQIEAATFQNDGTDV
TGAMSFALERFQIRGPGANRKRKLVLFSDGRSQGVTTAMLEKRVRQMADAGVELYVISVG
THVNESNLRYMASRGRSDDVTSAQHHLFRLADYSALLEGVFDQTVSHRVSKSSLGRTL
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atggagactctcggagttcttcttgcgctgttaagcgttggagcgctattctctggggcg
cgagctcaagtcagaagaccaaaatttgctgaatgtcctgttgacctctttttcgtgttg
gatacgtctgagagtgtcgccctgagagtcaaacctcccaatttctacattgatcagatt
aaagatttcaccaagcgcttcatagatgagctccaggacatgcgccatccatgtgaccgc
tacctgacctggaactctggagcgcttcactacagtgacgacataatcctggtgcgtcat
ctaagtgacatcagcaccgagcggcaggcactgaaagatgatgttgacaccatcaaatac
atcggcaaggggacacacaccgactgtgccatcaagagaggcttggcagaattgctaata
gggggctctcactaccatgagaataagtacattgtggttgtgactgatggtcatcccatc
acgggttacaaggagccttgtggaggagtgcaggaggcggccaatgaggccagacaacac
ggggttaaagtgttcgctgttgccatctcccccgaccaggaggacaccaggttgtctgtg
atcgctacagaccagcactacagacagaatttcactgctgccgatgacagcaggaccacc
aagatgaggactatccgcaccatcatagatatgataacaaatgagacgaaggatgtgtgt
tgctcgttcgactgcaacgcccaaggaggtcccaaaggaccggacggagagctgggttct
aagggagagataggaagacaggggatgccaggagagaagggggacatcggtccagcagga
aatcctggagaccctggccctgtgggataccgtggcatgaagggtgaccgcggtgaacgt
gggggcaagggtgatagaggtcataaaggctacaagggcgataaaggccacagagggaca
gatggggttgatggacggaagggtgatgcaggcttctctggtcttcctggctgtaaagga
tctcctgggccagatggcactcagggagatcctggtccaaagggagatcccggttcttac
ggagccaaaggagcaaaaggtgatgttgggaaggacggagagcttgggagacaggggaac
gacggcccctcagggcctaagggtgaccagggtccacaaggacccaatggggacaaagga
gagcggggcgatgatggcgctcctggaccagatggaggacgaggagacagaggtgcagca
ggagagaagggcgagcaaggttcccgtgggaacaggggccctaaaggagatggaggggat
ccaggcccaagaggagagccaggaagggaggggtcatccggtcccaatggagattcaggg
gagccaggacggccagggtctccaggctatcgaggagatgagggccaaactggaccagag
ggaccgaaaggacccagaggaatcaaaggagctcccggagacagaggcctgatgggggaa
aggggagaggatggctccccaggaaatggaactgaaggttgccatggtttccagggttac
cctggcccacgtggagatcctggagagccgggcggcaagggtacccctggaccaaaagga
gatgacggagaggccggagagtcaggcctggataacactcggccaggaattccaggacct
aaaggagccaaaggtcatagaggacctgagggcaacccgggacctcctggccctccagga
ccacctggagtcgatgagtgtaagattatggacatcatcatgaaaatgtgctcatgttgt
gagtgtaagtgtggtcctctagacctggcgtttatcgtggacagctctgagagtattggc
tccgctaactttgccctggccaaagacttcatcatcaccgtcatagacagactcatgaaa
gaccagcaagtccgctttggcttcaacgactccagagtgggcgttgttcagtacagtggc
tcgagcgctcaggaggccgtccagctgggagaccccaacataaacaaccttgttgagctc
aaacatgctgtgaggaacctgcgttggctagcagaagccacctatactggcgaggctctc
cagttttctctggacaaactgatcaaccagctaaagaataagaaccgtgtggtgctggtg
ctcactgacggccgctctgacaccaagagggacagagtccccctcaacaccctgtgtggt
aaaggcatcaaggtgggaggactgggagtgaaggacaactttggtcgccagcccaaccag
gaacagctcggggaggtggtgtgcactagcgatcctacaccaggcttctcctttgtactg
gataactttgctgaacttctcgacgacactttcctacagaacctcacagcacgcatctgt
gaagacaagaagtgtcctaaatacaaatgcgacatttcctttgacgaggacactgacgtt
gtggtgatgatggacagctctgccagcgtgggccagcgtaactttgagacgagcaagacg
tttgtccgccgtctcgccaagcgcttcctcactgcagagaagagagggcgggctaacgtc
agggtcggggtcgcccagtacagccggacgtctcgcacagaggcggagctgacctctaac
ctcaccgtgctgaacgatcagatcgaagcggccaccttccagaacgacgggacggatgtt
accggggcgatgagcttcgccttagaacgcttccagatcagaggtccgggagcaaacagg
aagaggaagttggtgctcttttcggatgggaggtcgcagggcgttaccacggcgatgctg
gagaagcgcgtgcggcagatggccgacgcaggggtcgagctgtatgtcatctccgtggga
acccatgtgaacgagagcaacctgcgctacatggccagtagagggcggagcgacgatgtc
acttccgcccagcaccacctgttccgcctcgcagactactccgccctgctggagggagtc
tttgaccaaaccgtgtcccacagggtctccaagtccagcctgggccgcacgctttag
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