Osmerus eperlanus (European smelt): 134036811
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Entry
134036811 CDS
T10927
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03013
Nucleocytoplasmic transport
oep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134036811 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
134036811 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oep03019
]
134036811 (thoc1)
03041 Spliceosome [BR:
oep03041
]
134036811 (thoc1)
Messenger RNA biogenesis [BR:
oep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
134036811 (thoc1)
Spliceosome [BR:
oep03041
]
Complex C
Other components
EJC/TREX
134036811 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
134036811 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
134036811
NCBI-ProteinID:
XP_062337897
LinkDB
All DBs
Position
16:3534118..3538803
Genome browser
AA seq
678 aa
AA seq
DB search
MYNTSPARVSSALRLLQASSNRGKMSPSLFNFIDAKDKFTASTLSALTNKNSKPLISAFN
QITGNELEKKTTFDQALRGVLEEQIVEQKASCDDFLSLIYLSIDGVTEGICSATTPFLLL
GDVLDCLPLDQCDKIFSFVEENVSTWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCG
RIQLFLARLFPLSEKSGLNLQSQFNLDNITVFNKNEQESTLGQKHTEEREDGMEVEEGEM
GDEDAPAPCSIPIDYNLYRKFWTLQDYFRNPVQCYDKFSWMTFLKYSDETLAVFKSFKLD
DMQASKRKLEELRTSGGEHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQV
KFKSSGCVLNDDQSAWMEETTKLVYQLLREIPPDGDKFATMVEHILNTEENWNSWKNEGC
PSFVKERPAEDKPKRPTRKRQAPEDFLGKGPDRKVFMGNDELTRLWNLNHDNMEACKSDS
REFMPSLEEFFEEAIEQADPVNMVEEEYKVVRNSNYGWRALRLLSRRSPHFFQPTNQQFK
SLADYLESMVIKLAKELPKDLPSEEIKTGEEDDDDNGDNLLKESNDSPSMQSKLVSNQQM
DEIAAKLGAQWKALAVQLEMKAVEVREIETDSEDVEMQAKLLLVAWQDREGPQATVENLV
TALNTAGFSQMADNLNEA
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgtacaacactagtccggccagggtcagttctgcgttgcggctgctacaagctagcagt
aacaggggaaaaatgtctccgtccttgttcaatttcatcgatgctaaagacaaatttact
gcttcgaccttaagtgcactgactaacaaaaacagcaaaccgttgatcagcgcattcaac
cagatcactgggaatgagttagagaagaaaaccacgttcgaccaagctctgaggggtgtg
ttggaagagcaaattgtagaacagaaagcaagctgtgatgacttcctttctctcatctat
ctcagcattgatggagtcacggaagggatctgttcggctactactcctttcctcttgttg
ggagatgtgttggactgccttcctctggaccaatgtgataagatattctcctttgttgaa
gaaaatgtatctacctggaaatcgaactccttctatacggctgggaagaactacttgttg
aggatgtgtaatgatctgctgaggagactgtccaagtctcagaacacagtgttctgtggg
agaattcagctgttcctggctcgcctgttccccctgtctgagaaatcaggtttaaatttg
cagagccagttcaacctggacaacatcacagtcttcaacaaaaatgaacaagagagcact
cttgggcagaagcacacagaggagagggaggatggcatggaggtggaggagggggagatg
ggagacgaggacgcccctgcaccatgctccattcccatcgactacaacctctacagaaag
ttctggaccctccaggactatttcagaaatcctgtgcagtgctatgacaagttctcgtgg
atgacgttcctcaagtattcagacgagacgttggcagtgttcaagagcttcaaactagac
gacatgcaggcctctaagagaaagctggaggagctaaggacctctggcggagagcacgtc
tactttgccaagttcctcaccagtgagaagctgatggacctccagctcagtgacagcaac
ttcagacggcacatcctcttgcagtatctcatcctcttccagtacctgaaaggccaagtc
aaatttaaaagctctggctgtgtcttgaatgatgaccagtctgcgtggatggaggagacc
accaaactggtttaccagctcctgagagagatcccacccgatggagacaaatttgccaca
atggttgagcatatcctgaacacggaagagaactggaactcttggaaaaacgagggatgc
ccaagctttgttaaagaaagaccagcagaagacaaacccaagaggcccacaaggaaacgg
caagctccagaggactttctgggaaaaggccctgataggaaggtcttcatgggaaacgat
gagttgaccagactgtggaacctcaaccatgacaacatggaggcctgcaaatctgacagc
agggagttcatgccatccctggaggagttcttcgaggaagccattgaacaagccgacccc
gtcaacatggtggaggaagagtacaaggtggtgaggaactccaactatggctggagagct
ctccgcctgctgtccaggaggagcccgcacttcttccagcctaccaaccagcagttcaag
agcctagcagactacctggagagcatggtcatcaaactggccaaggagctacctaaggac
ctcccctccgaggagatcaagactggggaggaggatgacgatgacaacggagacaacctt
ctcaaagagagcaacgacagcccaagcatgcagagcaagctggtttccaaccagcagatg
gatgagatcgcagccaagctgggggctcagtggaaggccctggcggtccagctagagatg
aaggcggtggaggtgcgggagatcgagacagacagcgaggacgtggagatgcaggccaag
ctgctgctggtggcctggcaggatcgggaggggccccaggccactgtggagaacctggtc
actgccctcaacacagctggcttctcccagatggcagataacctcaatgaggcatga
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