Osmerus eperlanus (European smelt): 134037598
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Entry
134037598 CDS
T10927
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
oep Osmerus eperlanus (European smelt)
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oep04121
]
134037598 (pdzrn4)
Enzymes [BR:
oep01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
134037598 (pdzrn4)
Ubiquitin system [BR:
oep04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
134037598 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
134037598
NCBI-ProteinID:
XP_062338971
LinkDB
All DBs
Position
17:3032763..3053387
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AA seq
829 aa
AA seq
DB search
MRHALTECVPLPDRHGGPSLSHTHTHTQTHTAPCSTALTVALTTRMGCNLCTLQKREEHY
KLLYEIAQVNGRDFSKAGSEDAVVEAMRREPIVVQVLRRTPRLHGDRQEVGVADVCTQTD
ITFEHIMALAKLRSPTPPVPDICPFLLSDSCHSLHTMEPEFYECPEYLSQAPAQGGRVEE
MEYEEVELLRLNSQEKLGLTLCYRTDDEEDTGIYVSQVGTNSIAGRDGRIREGDRILQIN
GCDVQDREEAVALLSREDTRSIMLLLTRPETQMEEVWLDQDHRDFLEELKMEILQDQRRG
LRGREEVEEDTTDTATCSSLLQEKDSGLGRLEDSSEQELQLAQVCRRPAQVLRARTRKGQ
GQGGRGETQGGHSFTTAQGRDGGVGRGGCGVGVECDRFQQLLELKCQIGNSGECGLFYSR
RSTIECSVTEPRGGGGGGAGVEQELRMLNEELRSIELECQSIMQAHQLRQTQKDPPSSPS
LSPGRSPRDGLRCHGRLADIREQPGLEKGDSDRIRDKDSSSAYHTADSARSTPLGVEMSP
EHSLQRHISLTNQRNLRSTLACASTHTPSHPRLDPSPVISSSPDQSNPSPSESDPAMPAD
DERCDRKGRSRGGQRAPPYASPYHTAPHPGAASHNKQLQSYMQLLQQSSSLDYSQSQVSL
LSLGVCPAPLHRPPRPGEPRLEWRVKVRADGSRYVARRPARDRILRERALRIREERSGGM
TTDDDAMSEMKMGRYWSKEERKQQLARAREQRRRRELLQRSLREGPASGAEGRKEVNIVE
LSHKKMMKRRHRKILDSWMTIQELMSHGARSPAPEGARVHNNFLSVTTV
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgagacatgctttaacggagtgtgttccgctgcctgatcgccacgggggaccctctctc
tcacacacacacacacacacacaaacacacacggcaccgtgcagcacagcgctcaccgtc
gccctgacaactagaatgggctgcaatttgtgcactttacagaagcgggaggaacactac
aagctgctgtatgagattgctcaggtgaatgggcgggacttctcgaaggcggggtcggag
gacgcggtggtggaggccatgaggagggagcccatcgtggtgcaggtgctgcggcggact
ccccgtctccacggcgacagacaggaagtgggcgtggcggacgtgtgcacgcagacggac
atcacctttgaacacatcatggcgttggccaagctccgctcacccacccctcctgtaccg
gacatctgccccttcctgctgtctgatagctgtcactccctccacaccatggagccagag
ttctacgagtgtccggagtacctgtcccaggccccggcccagggtggcagagtggaggag
atggagtatgaggaggtggagctactcaggctgaacagccaggagaagttgggtctgacc
ttgtgctacaggactgatgatgaggaggacacaggcatctacgtcagccaggtgggaacc
aacagcatcgctggcagagacgggcggatccgggagggagacaggatcttacagatcaat
ggctgcgacgtgcaggacagagaggaggcggtggctctgctgagcagagaagacaccagg
agcatcatgctactgctcaccaggccagagacacagatggaggaggtgtggctggaccag
gaccacagggacttcctggaggagctgaagatggaaatccttcaggatcagaggagaggg
ctccggggtcgagaggaggtggaggaggacacgaccgacacggccacctgctcctcgctc
ctccaggagaaggacagtggtctgggtcgcctggaggacagctctgagcaggagctccag
cttgcccaggtatgcaggcggcctgcccaggtcctgagggcccggacgcggaaaggacag
gggcagggcggtcggggggagacccagggaggccactccttcaccacagcccaggggaga
gacggcggagtgggcagaggcgggtgcggggtcggggtggagtgtgaccgtttccaacag
ctcctggagctcaagtgtcagatcgggaacagcggggagtgtggcctgttctacagcaga
cgcagcaccatcgagtgtagtgtgacggagccgagaggaggaggaggaggaggagcaggg
gtggagcaggagctaaggatgctgaacgaggagctgaggagcattgagctggagtgccag
agcatcatgcaggcccaccagctccgtcagacccagaaggaccccccgtcctctccctcc
ctttccccaggaaggagccccagagacgggctgcggtgccacggtcggctggctgacatc
cgggagcagcctggtctggagaagggcgacagtgacaggatcagggacaaggacagctcc
agcgcctaccacacggccgacagcgcccgctccacgcccctgggggtggagatgtcaccc
gaacactccctccagagacacatcagtctgaccaatcagaggaacctccgcagtaccctg
gcctgtgcctccacccacaccccgtcccaccccaggctagacccgtcccccgtcatctcc
agcagcccggaccagagcaacccctccccctcggagtcagaccccgccatgcccgcggac
gacgagcgttgtgacaggaaggggcggagccgcgggggtcagagggcgcctccctacgcg
tcgccctatcacacggccccgcatcccggagccgcctcacacaacaagcagctacagtcc
tacatgcagctgctccagcagagctcgtccctggactactcccagagccaggtgagtctg
ctcagcctgggggtgtgcccagcacccctgcaccgccctccccgccccggggagccccga
ctggagtggagggtcaaagtgcgcgccgacggctcccgctacgtggcccgcaggccggcg
agggaccgcatcctgagggagcgggcgctgcgcatcagggaggagaggagcgggggcatg
accacggacgacgacgccatgagcgagatgaagatgggacgctactggagcaaggaggag
aggaagcagcagctggctcgagcgagggagcagaggaggaggagggagctgctgcagcgc
agcctgagggagggcccggccagcggggccgagggcaggaaggaggtgaacatcgtggag
ctgagccacaagaagatgatgaagaggaggcaccgcaagatcctggacagctggatgacc
atccaggaactgatgagtcacggggctcgaagccccgcccccgagggggcccgtgtccac
aacaacttcctgtctgtcaccacggtctag
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