Osmerus eperlanus (European smelt): 134037645
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Entry
134037645 CDS
T10927
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03013
Nucleocytoplasmic transport
oep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134037645 (upf2)
03015 mRNA surveillance pathway
134037645 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oep03019
]
134037645 (upf2)
Messenger RNA biogenesis [BR:
oep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
134037645 (upf2)
mRNA cycle factors
P-body specific factors
134037645 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
134037645
NCBI-ProteinID:
XP_062339038
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All DBs
Position
17:complement(4200081..4213525)
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AA seq
1342 aa
AA seq
DB search
MPAERKRSLNMDEKEVCSFTNKEKEKEREGERRPPSRDKSKDETKMSGKKDSGKAVEEKR
RRVEEEKKKKEEKERKKKEEEKLKAEEEQKKKEEEEKQQQEEEERKLQEEEARKQREEEA
AQLKEKEESHQLHQEAWKSHQSRKELRSKNQNVHEGRPEESFFSRLDSSLKKNTAFVKKL
RTLTEQQRDSLSNDFGSLNLSKYIGEAVSSVVEAKLKISDVGCAVHLCSLFHQRYAEFAP
LLLQAWKKHFEARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKNIIGTD
RETHTHVSVVISFCKHCGDDIAGLVPRKMKLAAEKFGLAFPPSEIINTEKQQPFQNLLRE
YFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLAD
LLDENMPELPQDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENMVDLKAFV
PAILFKDNEKSNQAKDKEEAKDAGKEAASTEELELELEALDIADDALELEGADEAENEEL
AKKLLDDQGFRLGSGKGQGKTAIGRSEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLID
KAAMDFCMNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLK
GDFRFHIRKKDQINIETKNKTVRFIGELAKFKMFTKTDTLHCLKMLLSDFSHHHIEMACT
LLETCGRFLFRSPDSHLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVR
KKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDPESKSYLICCMVNIWNVKYNSIH
CVANLLAGLVAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVE
SAVIFRTLFSFISFGVNPDGVPSPLDPPEHLFRIRMVCTLLDTCGQYFDRGSSKRKLDCF
LIYFQRYIWWKKSVELWSVDHPFPIDIDYMISDTLEMLRPKMRLSCSLEEAIKQVAELER
EVLVKLELEIKAMERQMRTGRERREKAEEEKRGTACAREEKEAEEENQEIKTGIPVAGLA
MEKDGRCSSALGEGEALDEEDDDDDEEGGAETEEQSGNESEMNEPEEEEGSENEEEEREE
EEEENTDYLTDSNKENETDDESNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSG
EAVKVHQLDVAIPLQLKSQLKKGPGPACTGEGDADGSDTMQFVMLTRKGNKQQYKILNVP
LSSHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPANTNRERR
PRYQHPKGAPNADLIFKTGGRR
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgaacgcaagcgatcgttaaacatggatgagaaagaagtttgctctttcacc
aataaggagaaggaaaaggagagagaaggtgaaaggcggcctccttcccgggataaatca
aaagatgagaccaaaatgagtggtaagaaggacagcggtaaagctgttgaagagaagagg
aggcgtgtggaagaagaaaagaaaaagaaggaggagaaggagcggaaaaagaaagaggag
gagaaacttaaggcagaagaagagcaaaagaagaaagaggaagaagaaaaacaacagcag
gaagaagaggagaggaagcttcaggaggaagaagcccgaaagcaacgagaagaggaggct
gcacaactcaaggagaaagaggagagccaccagctgcatcaggaggcctggaaaagtcac
cagtccaggaaggagctgcgcagtaagaaccagaatgttcacgagggccgacccgaggag
tcctttttcagccgtctggactccagcctgaaaaagaacacagccttcgtcaagaagctg
cgcaccctcaccgagcaacagcgggactctctttccaacgactttggctcgctcaacctc
agcaagtacatcggtgaggctgtgagttctgtggtggaggccaagttgaagatctccgat
gtgggctgtgctgtgcacctgtgctctctcttccaccagcgctatgcagagttcgcccca
ctgcttctgcaggcctggaagaagcactttgaggcccgtaaagaggagaaggcccccaac
gtgagcaagctgcgcacagacctccggttcatcgctgagctcaccattgtgggcctcttc
accgacaaagagggcctgtctctcatctacgagcagctgaagaatattatcgggacagac
cgggagacacacacacacgtgtcagtggtcatcagcttttgtaagcactgcggggatgac
atcgctggcctggtacctcgcaagatgaagctggcagcagagaaatttggtctggctttc
cctcccagtgagatcatcaacacggagaagcagcaacctttccagaatcttctgagggag
tacttcacctcgcttaccaagcacctgaagaaggaccacagggagctccagaacattgag
cggcagaacagacgtattctccactccaaaggagagctgagtgaggacagacacaagcaa
tatgaggagtttgctacctcctaccagaagcttctggcaaatacccagtcactggcggac
ctgctggatgagaacatgccagagctcccccaggataaaactgtacaggaggagcatggc
cctggcattgacatcttcacccctgggaagcctggggagtacgacctggaggggggcatc
tgggaggacgaagacgcccgcaacttctacgagaacatggtggacctcaaggctttcgtc
cccgccatcttgttcaaggacaacgaaaagagcaaccaggctaaagacaaagaggaggcc
aaagatgctgggaaggaggcggccagcacagaagagctggagctggagctggaagccctg
gacatcgccgacgacgctctggagctggagggagccgacgaggcggagaacgaagagctg
gccaagaagctgctggacgatcaagggttcaggttagggtcagggaaaggtcagggaaag
acggcaatcggccgctcagaacaagaggatgaggaagccagcactggctcccacctgaag
cttatagttgacgccttcatccagcaactccctaactgtgtcaacagagacctgatagac
aaggctgccatggacttctgcatgaacatgaacaccaagtccaacaggaggaagctggtc
cgagctctcttcacagtccccagacagaggttggatctcctgcccttctactcccgcctg
gtggccaccctccatccctgcatgtcagacgtggctgaggacctgtgctccatgcttaaa
ggggacttccggttccatattcggaagaaagaccagatcaatattgagacgaaaaataaa
accgttaggttcattggagagctggccaaattcaagatgtttaccaaaacagacacgctt
cattgtctgaagatgctgctgtctgacttctcccaccaccacatcgagatggcctgcacc
ctgctggagacctgcggacgcttcctgttcagatcccccgactcccacctacgcaccagc
gtcctcctggaacaaatgatgcgtaagaagcaggcccagcacctggacgcacgctacgtg
accatggtggagaacgcctactactactgtaaccccccgcccatggagaagaccgtgcgc
aagaagagacccccgctgcaggagtacatccgcaagctgctctacaaggacctgtccaag
gtcaccacggagaaggtgttgaggcagatgaggaagctgccctggcaggaccccgagagc
aaaagctacctgatctgctgcatggtcaacatctggaacgtcaagtacaacagcatccac
tgtgtggctaacctgttggccggcctggtggcctaccaggaggatgtgggcatccatgtg
gtggatggtgttctggaggacatccgcctgggcatggaggtgaaccagcccaagttcaac
cagcgcaggatcagcagtgccaagttcctgggggagctctacaactaccgcatggtggag
tctgccgtcatcttccgcaccctgttctccttcatctcgttcggggtgaaccccgacggc
gtccccagccccctggatccccccgagcacctgttccgcatccgcatggtgtgcaccctg
ctggacacctgcgggcagtactttgaccgaggctccagcaagaggaagctggactgcttc
ctgatctactttcagcggtacatctggtggaagaagagtgtggagttgtggagtgtggac
catcccttccccatagacattgactacatgatcagtgacaccctggagatgctccggccc
aagatgaggctcagctgctccctggaagaggccatcaaacaggtggctgagctggagagg
gaggtcctggtcaaactagaattggaaatcaaagcgatggagaggcagatgaggacaggg
agagagcgcagggagaaagcagaggaagagaagaggggaactgcctgcgctagggaagag
aaagaggcggaagaagagaaccaggagataaagacaggcattcctgtggcaggtctggcc
atggagaaggacggccggtgctccagtgccttgggagaaggagaggctctggatgaagaa
gacgatgatgatgatgaggagggaggggcggagaccgaggaacagtccggaaacgagagc
gagatgaacgagccagaggaggaggagggctcggagaacgaggaggaagagcgggaggaa
gaggaggaggagaacacggactacctgaccgactccaacaaggagaacgagactgacgac
gagagcaatgaggtgaccatccgcgggggagggctgaagcacgtggcctgtgctgaggac
gaggacttcatccaggctttggataagatgatgctggagaaccttcagcagcgcagcggc
gaggcggtcaaggtgcaccagctggacgtagccattcccctgcagctgaagagccagctg
aagaagggacccggaccagcatgcactggggagggcgacgccgacggctccgacaccatg
cagtttgtcatgctcacgcgcaagggcaacaagcagcagtataagatcttgaacgtgccc
ctgtcctctcacctggcggccaatcacttcaaccagcagcaggctgagcaggaggagcgc
atgcgcatgaagaagctcaccctggacatcaacgagaggcaggaacaggaggactaccag
gagatgatgcagtccctggcccagcgtccggctccagccaacaccaaccgagagcgtcgg
ccacgctaccagcaccctaaaggtgctcccaacgccgacctcatcttcaagactggagga
aggaggtga
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