Osmerus eperlanus (European smelt): 134038111
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Entry
134038111 CDS
T10927
Symbol
lsm8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03018
RNA degradation
oep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134038111 (lsm8)
09123 Folding, sorting and degradation
03018 RNA degradation
134038111 (lsm8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oep03019
]
134038111 (lsm8)
03041 Spliceosome [BR:
oep03041
]
134038111 (lsm8)
Messenger RNA biogenesis [BR:
oep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134038111 (lsm8)
mRNA degradation factors
5'-3' decay
Lsm complex
134038111 (lsm8)
Spliceosome [BR:
oep03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
134038111 (lsm8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
134038111
NCBI-ProteinID:
XP_062339715
LinkDB
All DBs
Position
17:556235..557569
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AA seq
96 aa
AA seq
DB search
MSTALETYINRTVAIITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSNLDLGNIRAEPLNSVAH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaccgcccttgagacctacatcaaccgcacggttgcaatcattacctccgacgga
cgcatgattgtaggcacgctgaagggcttcgaccagaccattaacctgattctggacgag
agccacgagcgagtattcagctcctctcagggcgtggagcaggtggtgttgggcctttac
attgtcaggggagacaacgtggctgtgattggagagattgacgaggagaccgactccaat
ctggacctgggcaacatcagagcagagcccctgaactcagtagcccactaa
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