Osmerus eperlanus (European smelt): 134038439
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Entry
134038439 CDS
T10927
Symbol
nup54
Name
(RefSeq) nucleoporin p54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134038439 (nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oep03019
]
134038439 (nup54)
Messenger RNA biogenesis [BR:
oep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
134038439 (nup54)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
Motif
Other DBs
NCBI-GeneID:
134038439
NCBI-ProteinID:
XP_062339773
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Position
18:6194145..6201003
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AA seq
576 aa
AA seq
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MAFNFGNVATNPASTSGFSFGSFGAKTTASSTFGFGTTTTAAPTGFGTGLAAPGFGATTT
TAAAPSGFGFGSTATGFGGLGAGNTAAGAFGGFGTTTTSAAPGSTFSFAAPSSATGGLFG
NTQNKGFGFSSGLGAGTAPGTTGFGTGLGTTTLGGGFGGFNIQPTQQQQGGLFGQQPQPQ
PQPTQLYQQVTALSAPTLLGDERDAILAKWNQLQAYWGTGKGYYSNNAPPVDFNQENPFC
RFKAVGYSCIPGSKDEDGLVALALNKKEADVRAQQQQLVESLHKVLGGNPTLAVNVEGVK
ALPDDQTEVIIYVVERSPNGTSKRIPATTLYGYVEQANVKAHLTQLGVLMSVTRTELSPA
QFKQLLQNAPAGVDPIIWEQAKEDNPDPEKLIPVPMVGFKELLRRLKIQDQMTKQHQTRV
DIISNDISELQKNQSITVAKIAQYKRKLMDLSHRVLQVLIKQEIQRKSGYAIQVEEEHLR
VQLDTCQSELNAPTQFKGRLNELMSQIRMQNHFGAVRSEERYSVDADLLREIRQHLKQQQ
EGLGHLISVIKDDMEDIKLIEHGLHDNVHIRGGMLS
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcaacttcggtaacgttgcaaccaatcctgcaagcacgtctggattttcattt
ggttcatttggtgccaaaactacagcatcaagcacatttggctttggcaccaccaccaca
gctgcccccacaggatttggtacaggccttgccgcccctggttttggggcgaccactacc
accgcagcggcgccctcagggttcggctttggctccaccgccacaggatttggggggctg
ggagccgggaacaccgcggctggtgcttttgggggctttgggaccaccaccacatccgct
gcgcccggctccactttcagctttgcagctccttcaagtgccacagggggcctgtttggt
aacacccagaacaaaggttttgggttctcctctggactgggagctggaaccgccccaggg
acgactgggtttggaaccgggcttggaacgaccactctgggtggagggttcggcggcttc
aacatccagccaacccagcaacagcaaggcggcttgtttggccagcagccccaaccccag
ccccagcccacccagctctaccagcaggtcactgccctctccgcccccaccctgctggga
gacgagcgcgatgccatcctggccaagtggaaccagctgcaggcctactggggcacaggc
aagggctactacagcaacaacgccccccccgtggacttcaaccaggagaaccccttctgc
aggtttaaggccgtgggctacagctgcatccccggcagcaaggacgaggacggcctggtg
gccctggccctcaacaagaaggaggccgacgtgcgggcgcagcagcagcagctggtggag
tcgctccacaaggtgctgggggggaaccccacgctcgccgtcaacgtggagggagtcaaa
gctctgccggacgaccagacggaggtgatcatctatgttgtggagcggtcccccaacggg
acgtccaaacggatcccagccaccacgctgtacggctacgtggagcaggccaacgtcaag
gcccacctcacgcagctgggcgttctcatgtccgtcacacgcaccgagctgtcccccgct
cagttcaaacagctgctgcagaatgcccctgcaggtgtggaccccatcatctgggaacag
gccaaagaggacaatcctgacccggaaaagttgatccctgtgcccatggtgggcttcaag
gagctcctccgcaggctgaaaatccaggaccagatgaccaagcagcaccagaccagagtc
gatatcatctccaacgacatcagcgagctgcagaagaaccagtccatcaccgtggccaag
atcgcccagtataagaggaagttgatggacctctcccacagggttcttcaggtgctcatc
aagcaggagatccagaggaagagtggctatgccatccaggtggaggaggagcacctgcgc
gtgcagctggacacctgccagtctgagctcaacgctcccacacagttcaaggggcggttg
aacgagctcatgtcccagatccggatgcagaaccactttggggcggtacgctctgaggaa
cgctatagcgttgatgccgacctactccgtgagatcagacagcacctcaagcaacaacag
gaaggcctaggtcacctgataagcgtcatcaaagacgacatggaagacattaaactgata
gaacacggtctccatgacaacgtacacataagggggggcatgctcagctga
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