Osmerus eperlanus (European smelt): 134038769
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Entry
134038769 CDS
T10927
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134038769 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oep03019
]
134038769 (patl1)
Messenger RNA biogenesis [BR:
oep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134038769 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
134038769 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
134038769
NCBI-ProteinID:
XP_062340317
LinkDB
All DBs
Position
18:complement(872396..880393)
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AA seq
808 aa
AA seq
DB search
MFRFQSLDEDCTLEEEVGPVEEEDEIDQFNDDTFGAGAIDDDWQEEHKRLAELDQRVWDG
LGGGGMGGGGGGGGVGMGGGGGGGERGAGDASSMHLPPPAGHLPSSIPPLLSSSSSLPPP
GLEERGGGDFAESLARLILGADPAITGVGPAGPDCSRGLPPMLLHPQLPPPGGSLGPHHL
SLLSYQQQQQHLRRPTPPMQQVNSHSIWENSMGFGPVSITPVLGTHMEDSPLMSIIKEVG
LPKRPPPMRNDEGRDLSERVPPPRSSSPVIGSPPVRAVPIGTPPKQPMSHALNHQIHHPT
AVHVRAPVQHRYPPPFPDRLSPNTLLNIAASKFSCVSFQNSPLCRPPFPGGVGPVLSQIQ
RAQMLNAQVAGFPRGGPPPPMLPGGGGFRPFFGQPLHRLGPPHPPLPNHTPIRHNTTHLH
PQHRRMLTQRMQSRGGGDRGVRVGDRRSRDPYSNLMTQREKEWVAKIQMMQLQSTDPYLD
DYYYQNYYEKMERRQERDRDSSRKEHSTKLITPQVAKLEHTYRPVQFAGSLGKLTVSSVN
NPRKMIDAVVTTRTDDEEKREKQVWNKRRQILYTVEKMYSLLLEVQDFEKRFLQTPDEQR
EALIEQHKSNTMQLSSSLREKEWEDRVSDEQCLMIMSVRKGKRLISRLLPFLPQPQAAAV
VMAIARNMPALAKKDKQDQALCWLVEPVAIVIQSLSSPALTDVLQELQGTEGQLASVLQN
KFGVTLLYLILSKGERMQSSDPNCQLMDDNRWTELVFSVTRELLNVPSSSLSPPLFTPPN
LLSLFSRYVDRQRLELLQDKLQITALSR
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgttccgatttcagtccctggatgaggactgcaccctggaggaggaggttggcccagta
gaggaggaagatgagatcgaccagttcaacgacgacacatttggtgccggcgccatcgat
gacgactggcaggaggagcacaaacgcctcgctgagctcgaccagcgtgtgtgggacggt
ttaggaggaggagggatgggcggaggaggaggaggaggtggtgtagggatgggaggaggt
ggaggaggaggagaaagaggagccggggacgcctcctcgatgcatctccctcctcctgca
ggccacctcccctcctccattccccctctcctctcctcctcctcctctctgcctcccccg
ggcctagaggagcgaggggggggcgacttcgcagagtccctggccaggctcatcctcggg
gcggacccggccatcaccggcgtggggccggccggtcccgactgctccaggggcctgccg
cccatgctcctccacccccagctgcccccccccgggggctccctagggccccaccacctc
tccctcctcagctaccagcagcagcagcagcaccttcgcagacccaccccccccatgcag
caggtgaactctcacagtatctgggagaacagcatgggcttcggtccggtcagcatcacc
cctgtcctgggcactcacatggaggacagtcctctcatgtccatcatcaaggaggtgggg
cttcccaagcggcctcctccaatgaggaatgatgaggggcgggacttgtctgagagggtc
cctcctccacgctcgtcctctcctgtgataggtagcccacctgtgagggctgtgcctatc
gggactccgcccaaacagccaatgagtcatgccctaaaccatcagatccaccacccaact
gcggttcatgtgcgagccccggtccagcatcgctaccctcctcccttcccagaccgcctc
tcccccaacaccctgctcaacatcgctgcttctaagttctcctgtgtctcgttccagaac
tcccccctgtgccgccccccgttccccgggggcgtggggccggttctgtcccagatccag
agagctcagatgctcaacgctcaggtggcagggtttcccagggggggccctccacctccc
atgttaccaggcggggggggattcagaccgttcttcggccagccgctccaccgcctgggc
ccgccccaccctccgctccccaaccacacccccatcagacacaacaccacccacctgcac
ccccagcaccgacgcatgctcacccagaggatgcagagcagaggaggaggggacagaggg
gtgagggtgggagacaggcggagcagggacccttacagtaacctgatgacccagagagag
aaggagtgggtcgccaagattcagatgatgcagctgcagagcactgacccctacctggac
gattactactaccagaactactatgagaagatggagcggaggcaggagagagacagagac
agcagcaggaaggagcacagcaccaagctgatcacccctcaggtggccaagctggagcac
acctacagaccagtgcagtttgcaggctcgctgggtaagctgacggtctccagcgtcaac
aacccccgcaagatgatcgacgccgtggtaaccacacgcacggatgacgaggagaagagg
gagaagcaggtgtggaacaagagacgacagatcctctacactgtggagaagatgtacagc
ctgctgctggaggtgcaggactttgagaagcgcttcctgcagactccagatgagcagcgg
gaggctctgatagagcaacacaagagcaacacaatgcagctctcctcctccctcagagag
aaggagtgggaagacagagtgagtgatgaacagtgtctgatgatcatgtccgtcaggaag
gggaaacgcctcatctccaggctcctccccttcctgccccagccccaggccgccgccgtt
gtcatggcgatagcccgcaacatgcccgccctggccaagaaggacaagcaggaccaggcg
ctctgctggttggtggagccggttgccatagttatccagtccctgtcaagccccgccctc
acggacgtgctgcaggagctgcagggcactgagggacagctggcctccgtcctgcagaac
aagtttggagtgacgttactgtaccttatcctcagtaagggagagaggatgcagagctca
gaccccaactgtcaactcatggacgacaaccgatggactgagctggtgttctctgtgacc
agggagctgctaaacgtgccctcctcctccctgtctccccctctcttcacccctcccaac
ctgctgtcgctcttctctcgctacgtcgaccgtcagagactggagctgctgcaggacaag
ctacagattactgcgttgtccaggtag
DBGET
integrated database retrieval system
