Osmerus eperlanus (European smelt): 134039287
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Entry
134039287 CDS
T10927
Symbol
arhgef12b
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04270
Vascular smooth muscle contraction
oep04625
C-type lectin receptor signaling pathway
oep04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
134039287 (arhgef12b)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
134039287 (arhgef12b)
09153 Circulatory system
04270 Vascular smooth muscle contraction
134039287 (arhgef12b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oep04131
]
134039287 (arhgef12b)
Membrane trafficking [BR:
oep04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
134039287 (arhgef12b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
134039287
NCBI-ProteinID:
XP_062341032
LinkDB
All DBs
Position
19:2816808..2928929
Genome browser
AA seq
1505 aa
AA seq
DB search
MSGTQSTLTDRFPKKATRTASILSKDHPPDKKPKSDKAAVQSAHEFDPTELPVQKTVVAE
GSPEPCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAMRAGVQTGDRIIKVNGT
LVTHSNHVEVVKLIKSGSYVALTVLGRPPGLVQISLGEGEGDSGLSPSLSSPHSPGPTLG
ESLGLSPSSTTSPQDHITPPLALWEENSAVHSQKVDILHKMLTKEYQDLQAMQEEYSKNP
TPKLLKEIQEAKKHIPLLQGQLSKATGTPQDGPLSPRDGEAEEEGTDGDQTPSSRREGSS
DWPWTNNNTVTPSPFPESPCQRETPCHSPKTPKDSINCQLSDTEDTPDPSGVGSPSSCLN
PQIIGAEDDYFDTEQEQINGQCSCFQSMELLKSRPAHLAAFLHHVVSQFDPAPLLCYLYA
DLYKQTNSKETRRIFMDFHTFFMDRAANLKVAVPDSIASELERRRPELIPEDLHRQYTQV
LQDTLLADIQKNLEDFRQKRSMGLTLAETELAKLDTERVRDRVALERERSCAEHIISKIE
DVLLTSPSTEEEKCTTMQYVILTYMKHLGVKVKEPRSLEPKRVRINFLPKIKKSIKPEKE
GEEKVKKPRFPSILVPPRRPSRVDSTSIGKAMELTKQRPQKQLSQPAMGVSEHPESSSAG
SRARGSQSSEGSDASAQPLTYITSPPHSAPASQGSDFTGRDSDSGLPPSSALARLSEGVH
SGDALDGMSHPTSTHFDFSSCTLDQLQEEERESDRAPEGGTPKPARRMEGLSGLTSTDVQ
SEDDQGNEIECEQDPPNWQQLVSRDVLAGLTPQEIKRQEVINELFYTERAHLRMLKVLDY
VFYQKLTRDGILPPVDIKHIFTNLEEIVQLHVSITDQMTAIRKKNETSVIGQIGDDLLAW
FSAGEEEKIKRAVGTFCSNQPFALELIKTRQKKDQRFTSFMQEAESNRLCRRLQLKDIIP
VEMQRLTKYPLLLESIAKYTDDTEERDKVKRAGECCRKILNYVNQAVKEAENKLRLEDYQ
RRLDLSSLKQSENPMISEFKNLDLTKKKMVHEGPLSWKVNKDKIIELYTLLLEDILVLLQ
KQDERLVLKCHSKNLAGTADTKHIFSPIIKLSTVLVRSVATDNKSFFVLSMSDNGAQIYE
LMAQTVSEQRTWQCLITQRADNMKTKLHIIPLPQTDVEQEAVEIISTAVPKLSKDPDRTS
TGSIQSPEKDATSSLVLQAPQIGTNPFDGVKSEDEEEEEAVPDRGGGEEEEEEVSTFLEG
DLADRLPFLQQRSRQGIAMDEQEPDAFGIAPSRAEEALRTLAALKQVLLNHMMTREEGGR
EQEKDNEQRKGRAAGGRLLRTTSLRGPEDSSSSNPDCRTTPPSVVSAENASGLDQAETGK
EDRAPELPSGDTDIFETSEEYGSYMVLEGYGGSGESSTDDDGVLGGEGGIQWGSAGDFSI
DLKKLLSSSSQTGGAGPNLSRQVMTHLRLLQANLQHLKDVETKYNQLRQRLSETATDTEE
NKDQS
NT seq
4518 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcacacagtcaacactcactgacaggtttcccaaaaaagcaactaggaccgct
agcattctcagcaaggaccacccccccgacaagaaacccaagagtgacaaggccgctgtc
cagtctgcgcatgagtttgaccccacagaactgcctgtgcagaagactgtagtagcagag
ggaagcccagagccctgtgggcttgtccagcgttgtgtgatcatccagaaagacgagaat
ggctttgggctgacggtgagcggagacaaccctgtgtttgtgcaactggtcaaggaggat
ggcgctgccatgcgagctggtgtccagactggtgataggatcatcaaggttaacgggacc
ttagtaacacattcgaaccatgtagaagttgtcaagcttatcaaatcgggctcctatgtt
gccttgacggtgctggggcgacccccaggccttgtccaaatctccctgggggaaggggag
ggagactcaggcctgtccccttccctttcttccccccactccccaggacccacgttggga
gagtcgctcggtctctccccctcctccaccaccagcccccaggaccatatcacccccccg
ctggctctttgggaagagaacagtgctgtgcacagccaaaaagtggacatccttcataaa
atgctgactaaagagtaccaggacttacaggcaatgcaggaggagtatagcaagaacccc
acacccaaactactgaaggagatccaggaggccaagaagcacattccactgctacagggc
cagctcagtaaggccacagggacacctcaggacggccccctgtcgcccagggatggtgag
gcagaggaggaggggactgatggtgatcagaccccctcctcgcggagagagggcagcagt
gactggccctggactaacaacaacactgtgactccaagtcctttccccgagagtccgtgc
caaagagagaccccctgccacagcccaaagacccccaaagacagcatcaactgccagttg
tccgacaccgaggacacacccgatccctccggtgtgggaagcccctcctcctgcctcaac
ccgcagatcatcggagcagaggatgactactttgatactgagcaggaacagattaatggt
cagtgtagctgtttccagagcatggaactgctcaagtctagacctgctcacctggctgcc
ttcctacatcatgtggtctcgcagtttgatccggcacctctgctgtgctacctctatgcc
gacctatataagcagaccaattccaaagagaccagacggatctttatggactttcacacc
ttcttcatggaccgagcagcgaatcttaaagtcgcagtgcctgactctatcgcttctgaa
ctggaacgccggagaccagagctcattcctgaggacttacacagacagtacacacaggtc
ctccaggacacactcctagctgacatccagaagaacctggaggacttcaggcagaagcgc
agcatgggtctgacgctggcggagactgagcttgccaagctggacacggagagagtgcgg
gaccgggtggcactggaaagagagcgttcctgcgctgaacacatcatctccaagatagag
gatgtgctcctgacatcaccctccactgaagaggagaagtgcacaacaatgcagtatgtc
atcctcacctatatgaagcacctgggggtgaaggtcaaggaacctcgcagtctggaacct
aaacgagtccgcatcaacttcctgcctaagataaagaagagcatcaagcctgagaaagag
ggagaagaaaaggtgaagaagcctcgctttcccagcatcctcgtcccccctcgtcggccc
agcagagtggactccacatcaattggcaaggccatggagctgaccaagcagcgaccccag
aagcaactgtcccagccagccatgggggtctccgagcacccagaatcttcctctgctggg
agccgggcccgtgggagccaatccagcgagggttctgacgccagcgcccagcccttgacc
tatatcacctcacccccccacagcgcgccagcgagccagggctccgactttacgggacgg
gactcggactcaggcctccctccctcctctgctctggccagacttagcgagggggtccat
tcgggcgatgcccttgatggcatgtcccacccaaccagcacccactttgacttcagctcc
tgcaccctagaccaattacaagaggaggagcgagaaagtgacagagctccagagggagga
acgcccaagcctgctcggaggatggaagggttaagcggtttgacctctacagacgtgcaa
agcgaagatgaccaagggaatgagattgagtgcgaacaggaccctcccaactggcagcag
ctggtcagtcgagacgtcctggctggccttacaccacaggaaatcaagagacaggaagtt
atcaatgaacttttctacactgagcgagcacacctgagaatgctgaaggttctagactac
gttttctaccagaagctaaccagagatggcatcctccctccagtcgacatcaaacacatc
ttcactaacctggaggagatcgttcagctacatgtgtctataacagatcagatgacggct
atacgcaaaaagaatgagacatcagtcatcgggcagataggagatgatctgctagcatgg
ttcagtgctggagaggaggagaagatcaagcgggcagtgggcaccttctgcagtaatcag
ccatttgctttagaacttatcaagaccagacagaagaaagaccagcgcttcacctccttt
atgcaggaagcagaaagtaaccgcctctgtcgcagactgcagctaaaggatatcattcca
gtggagatgcagagactcaccaagtatccgcttttgctagagagcatagccaagtacaca
gatgacacagaggaaagagacaaggtgaagagagctggggagtgctgtagaaagatactc
aattacgtcaaccaagctgtcaaagaggcagagaacaaactgaggctagaagattaccag
cgacggttagacctgtcatctctgaagcagagtgagaaccctatgatatctgagtttaag
aatctggacctcaccaagaagaagatggtacatgaaggacctctttcctggaaagtcaac
aaagacaagatcattgaactgtacaccctgcttcttgaggacatcctggtccttctgcag
aagcaggatgaacgcctggttctcaagtgccacagcaagaacctggcagggacagcagac
accaagcacatcttcagccccatcatcaagctcagcaccgtgctggtgcgctctgtggca
actgataacaagtccttcttcgtgttgtccatgtcagacaacggtgcccaaatctatgag
ctaatggcacagacggtgtcagagcagagaacgtggcagtgtctaatcacacagagggcg
gacaacatgaagacgaaactgcacatcatacctttaccacaaacagatgtggagcaagaa
gctgttgagattatcagtacggcagtgcccaaactgagcaaagaccctgacaggacttca
actggaagtatccagtccccagaaaaagatgccacttcttctttggttctgcaagcccca
cagatagggaccaacccctttgatggtgtcaaatcagaggacgaggaggaagaagaggct
gtacccgacagaggaggaggggaggaggaggaagaggaagtgagcacattcctggaaggc
gatctggccgacagactgcccttccttcagcagaggtcacggcagggcatcgccatggat
gagcaggaaccagatgcttttggcatagctccttccagggcagaggaggcactaaggacc
ttggcagccctaaagcaggtgcttctgaaccacatgatgacccgtgaggagggaggaaga
gagcaggagaaagacaacgagcagaggaagggccgagccgccggaggccgactactcagg
accacctccctcaggggcccggaagacagcagcagcagcaaccctgactgcaggacaaca
ccgccctctgttgtctccgctgaaaacgccagtggtttggaccaggcagagactgggaag
gaagacagggctccagaactcccttctggtgacacagacatttttgagacatcggaggaa
tatggtagttacatggtcctggagggatatgggggttcaggggagagcagcactgatgac
gacggcgtgcttggtggagagggaggaatccagtggggctccgcaggcgacttcagcatc
gacctgaagaagctgctctcctcgtcctctcagacagggggcgccggccccaacctcagc
cgccaggttatgactcacctacgcctcctacaggccaacttgcaacatctgaaggacgtg
gagaccaagtataaccaactgcgccaaaggctgagtgaaacagctactgacacagaggag
aataaagatcagagttag
DBGET
integrated database retrieval system
