Osmerus eperlanus (European smelt): 134039333
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Entry
134039333 CDS
T10927
Symbol
nxf1b
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03008
Ribosome biogenesis in eukaryotes
oep03013
Nucleocytoplasmic transport
oep03015
mRNA surveillance pathway
oep05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134039333 (nxf1b)
03015 mRNA surveillance pathway
134039333 (nxf1b)
03008 Ribosome biogenesis in eukaryotes
134039333 (nxf1b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
134039333 (nxf1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oep03019
]
134039333 (nxf1b)
03009 Ribosome biogenesis [BR:
oep03009
]
134039333 (nxf1b)
Messenger RNA biogenesis [BR:
oep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
134039333 (nxf1b)
mRNA cycle factors
Stress granule specific factors
134039333 (nxf1b)
Ribosome biogenesis [BR:
oep03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
134039333 (nxf1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
UBA_8
LRR_8
LRR_4
LRR_9
Motif
Other DBs
NCBI-GeneID:
134039333
NCBI-ProteinID:
XP_062341124
LinkDB
All DBs
Position
19:12172964..12182364
Genome browser
AA seq
636 aa
AA seq
DB search
MSTTDDSRFNNDHDDRVGGQKIRNRKGRGPFRAPMYSDQAPASRSRHGGPRGGGQRGGGG
GPGPRARFDDEDGDVAMMDSNSQDSSSQQRFNPYGRPNRRRDDRFDRGSRGGGGGGQRGR
GNHRGDGNGGGRKTWFRISIPHGRKYDKEWLLKSLQNLCTMPFTPIQYHLEGNRAQFYIE
DSTTANALTKVSRRITDNKGYKVTVMMFPCAPPAFLQTELKPEDLEHLKQCMAKRFDGSQ
QALDLNNIQIDPDLVSQNIDVALNRKNSMQAIIKIIEENIPELVCLNLSNNKLFRLDDLA
ELVQKVPNLKTLNLSHNELKAERELDKLKGLKLAELWLDSNPLCSFFKDQAAYISVVRAR
FPRLLKLDGQDLPTPIGFDVEVVPAALPPCKPSYFGSEEIKGPILGFLHQYYSVYDSGDR
QALLDAYHDVATFSLVIPFTMQNPSRCSLGDYQKDSRNLKKMKDPTTRFRLLKNTRLNVV
AFLNELPKTQHDTASLNIDVNTFTNTLLAFTVSGIFKEVEGKSRDSVRAFTRVFVTVPAG
GTSLCIVNDQLFVRNASTEEIRRAFVAPAPTPSSSPVPSLSAPQQEMLTAFSLKSGMNLE
WSQKCLQDNKWDFNLAAQVFTDLKAHGKIPDVAFNK
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacaactgacgattcacgttttaacaacgatcatgatgaccgagtgggaggacag
aagattcgcaatcgcaagggtcgggggccattccgtgcccctatgtacagcgaccaagcg
ccagcgtcaagatcaagacatggaggcccaagaggaggtggtcagagggggggaggcggc
ggccctggacccagagcaaggtttgatgacgaggatggagatgtggccatgatggacagc
aactcgcaggattcttcctctcaacaaagatttaatccttatgggaggcctaatcgtcgt
agagatgatcgctttgatcggggctcaagaggggggggaggagggggtcagcgtggtcgg
gggaaccaccgaggggatggaaacggaggtggccggaagacctggttcaggatatcaatc
ccccatggacggaaatatgataaagagtggctattaaagtcgcttcagaacctctgcacc
atgcccttcaccccaatacagtaccacctagagggcaaccgagctcagttctacatcgaa
gattcaaccactgcgaatgcgcttactaaggtgtcacggaggataacggataacaagggc
tacaaggtgacagtaatgatgttcccctgtgcaccacctgcgtttcttcagaccgaactt
aaacccgaggatttggaacacttaaagcaatgcatggcaaaacgctttgatggctctcaa
caagcgcttgatttgaacaacatccagattgacccagatcttgtgtctcagaacattgat
gtggcattaaacagaaagaactccatgcaggctataatcaagatcattgaagagaacatt
ccagagcttgtttgtctgaacctcagcaacaacaagttgttcagactggatgatctagca
gagctggtgcagaaggttcccaatctgaagacccttaatctttcccacaacgagctgaag
gcggagcgcgaactggacaagctgaagggcctgaagctggcagagctgtggctggacagc
aaccctctctgcagcttcttcaaagaccaggccgcttacataagtgttgtgagggcacgc
tttccccggctcctcaaactggatggtcaagatctccccacgcctatagggtttgatgtg
gaggtggttcctgccgccctgcccccctgcaagcccagttacttcggctctgaggagatc
aagggtcccattctgggattcctccaccaatactacagtgtgtacgactccggagacaga
caggccctgctggatgcctaccatgacgtggctaccttctccctggtcatccccttcacc
atgcagaatccctccaggtgcagtctcggggactatcagaaagacagccgcaatctgaag
aagatgaaagaccccactacacggttccgcctattgaaaaacacacgtctgaacgtggtg
gctttcctgaacgaactgccaaaaacccagcacgacaccgcctccctcaacatcgacgtc
aacaccttcaccaacacgttgctagctttcaccgtcagtggaatcttcaaagaggttgaa
gggaaatccagggactccgtcagagccttcactcgtgtgttcgtcacagtcccggccgga
ggaaccagtctgtgcatcgtgaacgaccagctgtttgtacgcaacgcctcgacggaggag
atccgccgcgccttcgtggcgccggcgcccacgccctccagcagcccggtgccctcgctc
tccgccccgcagcaggagatgctcacggccttctccctcaagtccggcatgaacctggag
tggtcgcagaagtgcttgcaggataacaagtgggacttcaacctggctgcgcaagtcttc
acagaccttaaggcccatggcaagatcccagatgttgctttcaacaagtga
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